RNA id: CI01000063_01692878_01697954.mRNA



Basic Information


Item Value
RNA id CI01000063_01692878_01697954.mRNA
length 1106
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000063_01692878_01697954
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1692394 ~ 1698078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATGTACACATGCTCTTATCCGCATTCACCAGACTGTCTAAAATGTTGATGAACGACCTCAGCAATAAATACTGTAAGTCACCAGGGATCTGGAACGTCTCCCCTGAACTATATGTCAATGTATAGTTAGAGACAAGTAGTGGATTTACTGTCTGCACTACTGTTTAGATAAAAACATTAACAGCAGACCTGTCTCTCTCTCTCCACCCGAAAAGAAACAGAAAGAGCTCCTGTTTCTGGCTGTTCTTGTCTGTTAATGGTCAGTGATTTAAAAGAAACACTCCTACTTTTGCTTTCCGTTGCAAATGAGTAATGGAATAATTGAGTGACTCACATTTTACCAAAAGAAACCAATACATGGTTTCTTTTTATATAGCTGTTATACAAAGCTATAGCTACATTGTTGGAAACAAGCAGGTCTCACAGTCAGGTTCTCTGAGGGAACATGGACATGTCATCAGGTGGAGGACTACTGTAAACTATGGTACTCCCTTCTGGCTGCCATAAACTAGAAGGTCAGAGGGAAACACAAGAGAGCACAAGTTCTCCTGTGAACAGCTGCCAGCTGTGCTTCCTGCTCTGGGCCTCAGCAGGGGAACTGGAACCTTTGAAGTGGTCACGGTGTGTAGGATTACACAGTCCACCCAAAGGAATAACAATGTCTGAGGAAACTAGAAAATCTGGGATCTTACACACAAAGGCTCTTGCTGTTATGATTGATCTGATGATGAAGATGAAAGGAGCAAGAGCAGAAAGCAAAAACAGCAAAGTATTCCCTGGCAGTTCAAATGTCGGTCACCGGGGGGACATTATAATTCCTGTTTCTCAACACTGGAAAAACGTGGATACTGCAGGATTTCTTAGCAAACCATTTGTGCTGTACAGTTGTGTTCTGGACTCAGCGTTGAATTGTTACACTGGAGAAATGGATGTGTCAAGTCTTTTCAAAGGGGAAAAAGAAATGGAGGTTAAGAAGTAAAAAGGGGCCACCAAAACAACACCAGAATCTGAATGCATCCGTCAAATAGAAATATTTGTGTCAAATGCCAACACCAGGCTAAAAAGAATACAAACTGAATTTTTGAAATACTTTGTGTATGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297511 lncRNA upstream 6030 1682219 ~ 1686364 (+) True G262104
TU297508 lncRNA upstream 36345 1655202 ~ 1656049 (+) True G262101
TU297482 lncRNA upstream 157019 1533853 ~ 1535375 (+) True CI01000063_01533946_01534527
TU297714 lncRNA upstream 182766 1509279 ~ 1509628 (+) True G262266
TU297644 lncRNA upstream 493557 1196368 ~ 1198837 (+) True G262211
TU297766 lncRNA downstream 39720 1737798 ~ 1738321 (+) True G262314
TU297785 lncRNA downstream 107886 1805964 ~ 1806185 (+) True G262333
TU297529 lncRNA downstream 113430 1811508 ~ 1813486 (+) True G262122
TU297505 lncRNA downstream 152278 1850356 ~ 1854092 (+) True G262098
TU297973 lncRNA downstream 302784 2000862 ~ 2001064 (+) True G262511
CI01000063_01675750_01678399.mRNA mRNA upstream 13936 1675501 ~ 1678458 (+) True CI01000063_01675750_01678399
CI01000063_01672649_01673337.mRNA mRNA upstream 19009 1672574 ~ 1673385 (+) True CI01000063_01672649_01673337
CI01000063_01662111_01665744.mRNA mRNA upstream 26650 1662111 ~ 1665744 (+) True CI01000063_01662111_01665744
CI01000063_01658882_01660951.mRNA mRNA upstream 31252 1658882 ~ 1661142 (+) True CI01000063_01658882_01660951
CI01000063_01643090_01644021.mRNA mRNA upstream 47957 1642653 ~ 1644437 (+) True CI01000063_01643090_01644021
CI01000063_01739754_01764028.mRNA mRNA downstream 41166 1739244 ~ 1764772 (+) True CI01000063_01739754_01764028
CI01000063_01784971_01788682.mRNA mRNA downstream 86893 1784971 ~ 1788898 (+) True CI01000063_01784971_01788682
CI01000063_01824468_01849446.mRNA mRNA downstream 124776 1822854 ~ 1849454 (+) True CI01000063_01824468_01849446
CI01000063_01950136_01991996.mRNA mRNA downstream 250096 1948174 ~ 1992128 (+) True CI01000063_01950136_01991996
CI01000063_02207083_02208978.mRNA mRNA downstream 509005 2207083 ~ 2209144 (+) True CI01000063_02207083_02208978
TU297621 other upstream 547387 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 981840 710173 ~ 710554 (+) True G262060
TU297382 other upstream 1025012 665800 ~ 667382 (+) True G261984
TU297362 other upstream 1134060 552799 ~ 553605 (+) True G261973
TU297034 other upstream 1417944 252412 ~ 274450 (+) True G261700
TU297877 other downstream 543330 2241408 ~ 2242965 (+) True G262423
TU297890 other downstream 1015537 2713615 ~ 2714517 (+) True G262436
TU301223 other downstream 4215705 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 4637200 6335278 ~ 6335601 (+) True G265462

Expression Profile