Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU298810 |
| length | 1047 |
| RNA type | TUCP |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G263239 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 2176439 ~ 2177485 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU298994 | lncRNA | downstream | 155837 | 2020363 ~ 2020602 (-) | True | G263405 |
| TU298983 | lncRNA | downstream | 180335 | 1995766 ~ 1996104 (-) | True | G263394 |
| TU298831 | lncRNA | downstream | 187585 | 1949847 ~ 1988854 (-) | True | G263260 |
| TU298945 | lncRNA | downstream | 266069 | 1910148 ~ 1910370 (-) | True | G263356 |
| TU298939 | lncRNA | downstream | 274898 | 1901329 ~ 1901541 (-) | True | G263350 |
| TU298765 | lncRNA | upstream | 174846 | 2353182 ~ 2356169 (-) | True | G263201 |
| TU298774 | lncRNA | upstream | 188685 | 2367021 ~ 2369202 (-) | False | G263207 |
| TU298775 | lncRNA | upstream | 190447 | 2368783 ~ 2369202 (-) | True | G263207 |
| TU299019 | lncRNA | upstream | 202076 | 2380412 ~ 2381248 (-) | True | G263430 |
| TU299022 | lncRNA | upstream | 203010 | 2381346 ~ 2383423 (-) | True | G263431 |
| CI01000063_02174216_02175916.mRNA | mRNA | downstream | 277 | 2173913 ~ 2176162 (-) | True | CI01000063_02174216_02175916 |
| CI01000063_02041246_02172429.mRNA | mRNA | downstream | 4010 | 2041246 ~ 2172429 (-) | True | CI01000063_02041246_02172429 |
| CI01000063_02032344_02033792.mRNA | mRNA | downstream | 142440 | 2031528 ~ 2033999 (-) | True | CI01000063_02032344_02033792 |
| CI01000063_01915989_01944590.mRNA | mRNA | downstream | 231849 | 1915423 ~ 1944590 (-) | True | CI01000063_01915989_01944590 |
| CI01000063_01890725_01899483.mRNA | mRNA | downstream | 276893 | 1890392 ~ 1899546 (-) | True | CI01000063_01890725_01899483 |
| CI01000063_02180702_02195010.mRNA | mRNA | upstream | 2348 | 2180684 ~ 2195350 (-) | True | CI01000063_02180702_02195010 |
| CI01000063_02195608_02203412.mRNA | mRNA | upstream | 17243 | 2195579 ~ 2204155 (-) | True | CI01000063_02195608_02203412 |
| CI01000063_02212324_02222103.mRNA | mRNA | upstream | 33886 | 2212222 ~ 2223666 (-) | True | CI01000063_02212324_02222103 |
| CI01000063_02225053_02232182.mRNA | mRNA | upstream | 46551 | 2224887 ~ 2232182 (-) | True | CI01000063_02225053_02232182 |
| CI01000063_02234891_02253083.mRNA | mRNA | upstream | 55277 | 2233613 ~ 2253083 (-) | True | CI01000063_02234891_02253083 |
| TU298670 | other | downstream | 506363 | 1669411 ~ 1670076 (-) | True | CI01000063_01669384_01670016 |
| TU298801 | other | upstream | 146776 | 2325112 ~ 2327719 (-) | True | G263230 |
| TU298806 | other | upstream | 547423 | 2725759 ~ 2726535 (-) | True | CI01000063_02725759_02726399 |
| TU301418 | other | upstream | 2984158 | 5183279 ~ 5183287 (-) | True | G265567 |
| TU301411 | other | upstream | 3010067 | 5190050 ~ 5190617 (-) | True | G265565 |
| TU301419 | other | upstream | 3071669 | 5250005 ~ 5253811 (-) | False | CI01000063_05252331_05253850 |
