RNA id: CI01000063_02317828_02320348.mRNA


Basic Information

Item Value
RNA id CI01000063_02317828_02320348.mRNA
length 896
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000063_02317828_02320348
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2317361 ~ 2320348 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTTTCATCGTCACAGAGTGTTTCCACGATGCCAAGAGGAGGAGGCGAATGAAGGTGCTGAACGTGGAAGTTCATCAGAATCTGAAGAGGAGAGCAGCAGTGACGATGAACAACCTAAAAGGAAAGGTGTAGAAGGACTTATTGAAATCGAGAACCCGAACAGGACCGCCCATAAAAGCAAGAAGGTTGTGGAAATAGATGTCAACGCACCTAAAGAGCTCTCACGTCGAGAAAGGGAGGAGATTGAGAAGCAGAAGGCTAAGGAGCGATACATGAAGCTGCATCTAGAAGGGAAGACGGACCAGGCCAGGGCAGACCTTGCCAGGTTGGCCATTATCAAAAAGCAGAGGGAGGATGCAGCAAGAAAGCGAGAAGAGCTAAGGAAAGGTGAGCTGGTATCATTGCGTCTTCTGATGCAAGATCAATGAATGACAACCTATATAATGGATGAAAGAAATTATATAGTTTCCTGTTTAGTTGTGTTGAGAGATGCCTAAACCAGGGCCTATGAGACAAAATTAGCCCGTCATGACATATGATAATACCTGCCATGCCATATCAAAAAAACATGCTATTGAAGCATGCCTTTATTTTATCATTTTTTTCTTTTTTTAACGGAAAAGACCCCTTAACCATTCCACTGTACCACCTGTTGTACAAATACCATTCAAAAAGAGACCTTAGGAATGCTAAGGGGTTAAACTTTTTTTGCTTTATTTTTGTATTGAAATCAAGGTATATTTTAATATAATATACAACCCCAATTCCAGAAAAGTTTTGATAGCGATCATAAAGACATTTTCTAAAATGTAAAGAATCTGTGAATTTGTTCATTCTTTTTAAACTTAATTTAACTGACAAAAATATAAAAAAGTTGTGACAGAGGCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298994 lncRNA downstream 296759 2020363 ~ 2020602 (-) True G263405
TU298983 lncRNA downstream 321257 1995766 ~ 1996104 (-) True G263394
TU298831 lncRNA downstream 328507 1949847 ~ 1988854 (-) True G263260
TU298945 lncRNA downstream 406991 1910148 ~ 1910370 (-) True G263356
TU298939 lncRNA downstream 415820 1901329 ~ 1901541 (-) True G263350
TU298765 lncRNA upstream 32834 2353182 ~ 2356169 (-) True G263201
TU298774 lncRNA upstream 46673 2367021 ~ 2369202 (-) False G263207
TU298775 lncRNA upstream 48435 2368783 ~ 2369202 (-) True G263207
TU299019 lncRNA upstream 60064 2380412 ~ 2381248 (-) True G263430
TU299022 lncRNA upstream 60998 2381346 ~ 2383423 (-) True G263431
CI01000063_02293142_02305535.mRNA mRNA downstream 11826 2292193 ~ 2305535 (-) True CI01000063_02293142_02305535
CI01000063_02234891_02253083.mRNA mRNA downstream 64278 2233613 ~ 2253083 (-) True CI01000063_02234891_02253083
CI01000063_02225053_02232182.mRNA mRNA downstream 85179 2224887 ~ 2232182 (-) True CI01000063_02225053_02232182
CI01000063_02212324_02222103.mRNA mRNA downstream 93695 2212222 ~ 2223666 (-) True CI01000063_02212324_02222103
CI01000063_02195608_02203412.mRNA mRNA downstream 113206 2195579 ~ 2204155 (-) True CI01000063_02195608_02203412
CI01000063_02321620_02324262.mRNA mRNA upstream 1196 2321544 ~ 2324565 (-) True CI01000063_02321620_02324262
CI01000063_02326799_02327290.mRNA mRNA upstream 6393 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02357993_02360597.mRNA mRNA upstream 37578 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02404812_02415053.mRNA mRNA upstream 83794 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02416343_02425379.mRNA mRNA upstream 95925 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
TU298810 other downstream 139025 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 647285 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298801 other upstream 4764 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 405411 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2842146 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2868055 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2929657 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile