RNA id: CI01000063_03296061_03306819.mRNA


Basic Information

Item Value
RNA id CI01000063_03296061_03306819.mRNA
length 1777
RNA type mRNA
GC content 0.48
exon number 8
gene id CI01000063_03296061_03306819
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3295934 ~ 3306819 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACCTGCATCAGTAGACCCGGATTCCTCCTAAGTGACAGCGACTCCAGTGATTCAGAAGAGCTGCCTGTCTTCGATTTCTCACAGTCAAAATCCAGACAAGCCAACTTAGTGGTTTTAGACAGTTCAGACTCAGAAATGGCTCCTGTTGCTGATGCAATTTCAAGTGTAAAGGTCCACGTCTCCACCGGAGCTGCTAAAAGTGACGTGTTGATGGTCAGTAGTGACAGCGAGGAGGAGGAGGCCATCATTCCCTTAGCTGTGAGACTGAAACAGAAACAATGTGGTCTGGGTACAGCAGCCACTGGTGCAGAGGAGATTCTGGCTTCTAACGTGGTTCCTAATGGATATTCACACCTCTTAGATTTTCCAGCACATCATATCAACCCCGAGGCCCAGCTGGTTGAACATAACATGATCTGTAGAAACATAACAAGGCAGTGTAGCTCAAACAACGATGCACCATACCTTACAAAAGAACCTTCACCTGAAGCGGAGAATGGCACTTACCTGGCCAAATGCAAGAAAAGCCCAGCAGAAGTGGAGGCTGCCAGACAGGAAGCCCTGAGGAAACGAGCAATGCGAGAGCATCAGCAGGAAAAGAAGGAGAGACTGAGAATGGAGAAGAAAGCTCTGGCTGATGCTGTGAAAGCCCTAAGGCCAGAGGAGTGCATCAAACACATGGTGGTGACGGTCGACCCGGACTCACATACTGTAATCCAAGTTCCAGTGGATGACTTTGTGACCATGATTAACAACTACTGCAAGAGGCAAAGCAACGGTGTATTGACCGAAAGCGGCATATCTCTGACTGCCTGGATCCAAGGACTTATGAGCAGGAACCCAGGCAGAACCCTCAGTCTGATTGTGATTGACATAGAGAAGTACTTCAGATCCCAGAATTCAAAATGTCAGAAGAAATTCCGTGAGGCAGTGCTAGGCGAGGAAAAGAATGTAGGACTTCAGGGAGGGCAGAAAAAGAGAAGAAAGAAAGACGATATCAATCAGCTTCCAGAGGTCTCGCGAGTGCAGGTTGAGGAGGCTTTGGTAGACTTGCAGCTGCAAACTGGTGTGCAGGTTCGCTTCCTCTCTACCTGGAAAGACTTCACTGATTATATTACCATGTCAACCAAAGCAGTAGCCGAGGCACCGTTCAAGCGGGAGCGAGAGAAGACGGGATTCACATTTTGTTTAGAGAGTGAGTGGGCAGGGGGTCAGAAGGTGGACCGCACAGGGAACGGCCTTCTGCAAGTTTGGAAGAGACAAATACAGCAGTTGAACCGTGTCAGCCCTGATATGGCCAGTGCTATACTCAGTGCCTACCCGTCTCCTCGGCTCCTTGCTCAGGCATATGCACGGTGCAAATCGGAGAATGAAAAAGTTGGTCTGCTGTCAGATGTACTCATTCGTCGCGGAGAGGTTTCATATTCTTGGCAGAGTGGGGGCACTTCCAATTTCTTGAGTTGTGCCACAATAATGCCACCTGTAGTGTGCTGGCCCTCTGATGACAGTGGCATAATAATAACACATTTCCTCAGGCAAGTGATATGCCAACGAGGCAAAGCGACTGATATTATCCTTCCATTGCATTCTCAATGTATTTTGCCTTGGTGCTTGGCGAATCACGATCCACTCAGAGCCACTCGCTAAAATGACAAGAGAGAATGTCAAAGACTCTAACAATCTATTTCAGAGCATGAGTAGGCCGGCCACTGTGGTATTGGTTTCTTTGCCACCAGCGTTCAATCAATGTTTCCTGCTTCTCTTTAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300154 lncRNA downstream 15812 3279906 ~ 3280122 (-) True G264475
TU300145 lncRNA downstream 23458 3272166 ~ 3272476 (-) True G264466
TU300038 lncRNA downstream 151767 3143863 ~ 3144167 (-) True G264363
TU299998 lncRNA downstream 235620 3060102 ~ 3060314 (-) True G264323
TU299994 lncRNA downstream 254861 3040816 ~ 3041073 (-) True G264319
TU300160 lncRNA upstream 5426 3312245 ~ 3312469 (-) True G264481
TU300161 lncRNA upstream 5733 3312552 ~ 3312768 (-) True G264482
TU300174 lncRNA upstream 31407 3338226 ~ 3338521 (-) True G264495
TU300190 lncRNA upstream 47474 3354293 ~ 3354756 (-) True G264508
TU300060 lncRNA upstream 60442 3367261 ~ 3368526 (-) True G264382
CI01000063_02990060_02990880.mRNA mRNA downstream 304467 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 569400 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_02707551_02721566.mRNA mRNA downstream 574368 2706964 ~ 2721566 (-) False CI01000063_02707551_02721566
CI01000063_02675583_02681052.mRNA mRNA downstream 614882 2674054 ~ 2681052 (-) True CI01000063_02675583_02681052
CI01000063_02656350_02661590.mRNA mRNA downstream 634134 2656345 ~ 2661800 (-) True CI01000063_02656350_02661590
CI01000063_03373714_03386774.mRNA mRNA upstream 66224 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03426029_03462400.mRNA mRNA upstream 118787 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03615200_03619061.mRNA mRNA upstream 308317 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 321258 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03667811_03688065.mRNA mRNA upstream 360722 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
TU298806 other downstream 569399 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 968215 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1117598 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1625858 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1855675 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1881584 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1943186 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1943240 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1943347 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010234 False 2522 mRNA 0.46 9 NC_007123.7 21672075 ~ 21684255 (-)