RNA id: CI01000063_03615200_03619061.mRNA


Basic Information

Item Value
RNA id CI01000063_03615200_03619061.mRNA
length 1901
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000063_03615200_03619061
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3615136 ~ 3620436 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATCTATTAGTTTTAATAAATAAATCAGTGCCAGAAGAACTAGGAAACACCCATGATATTAAATTGTTCAGCACACAGTGGAGATGTAACAAGACATAACAAGTATATGAATTACCTAAGACATCTTAAATAGTTAAATAACACAGTAGTATGATATACTTAAGGGATAGTTCAGCAAAATGAAAATCCTGTCACCATTAACACATCTTCATGTTGATCCAATCCAATATGTCTTTCTTTCTTCTACTGAACACAGACAGAGAGGTTAGGAAGAATGTTAGGGACTGACAGCATTTGTCTTCTTTTTCTGTCATTGCATTTCCCCCATATCATGAAAGTAAGGTGACTGTGTCTGTCAGCCCCTAACGCTCTGCCTAACGTTGTTTTGTGTTTCACAGAAGAAAATGAGTAATACAGTTTTGAAACAACACGAGGGAGGGTAAATGATGACAGTTTTTCCCCTTTAGGTGAACTACCCCTTTAAAACAGTGAACGCATTGCAACTTTCATAACGGGATACAAAGTATCCATTGTGAAATCCTGTCACATTTGAACTAGTTATTACAAAACCTGTTATGAACTTGTTATTATAAAACAGCCATTCGCGACTACTACATTATGTATAATATTTCGTTTAAATAAACTACTATACCCATAAATCTCTGTATTTTTGCATAATCGCCTAATCTCTCTTCACTAGCACTTTCTATGACGTTAAAGGGGCGTGTGCCTTTTCAGCAAATTATCAACGCATCGAACGCTGATTGGGCAGCATCTTCCACGTGACTCACACCATCCAATCGGCGGCAATAACGATGAATATATTTCCATCTTTCTAAAGGTAAATTCTGAAAAATGATGACGTGAAACCATGAAGTCTTGCTGTGTTGTCACCATCTGTTTGCACAGGAACAAAGTGCTTCAAAGCAAACATAATGAAATAAACAGACGAGTCAAGTTTCGTGTGCGCAATACAGCAAGGCTACACGGCAAAAAGGCTCCAGAAAGGAAGATATCCTGATAACGTTTACGAAACGAGGAAAATAGGGCTATTATTATTTTCGTAAGGACTTATTGTGAAGTTTCTGCGTGATTCGTGAAGACTCTTGTGCAATATTGTACTGTAAGTGACCAGTGTTTTGTCCTACTTATAATTTTAAATAACAACAATAATTGAACAGTTTCAGAAGTTGCTTTTCCACACTCTGCATATTGATGGTGATTGTTACATTTTGTTTTATGACTTCTTATAGTCAATGCGTCCAAATGTCAGTGAACTAAATGTAATTTTAAACACATACTTACATTTACACTTGCTTCTTGTCTGTGACAGTAAGTGCGCAATAGTTCTAAGTGTCCCTCTGCTGCGCGAGGATGAATGTGGGCACGGCGCACAGTGAGGTGAATCCAAACACGCGCGTGATGAACAGCAGGGGTATATGGCTTTCATATGTGCTTGGCATCGGCCTACTACACATCATATTGCTCAGCATACCCTTCGTCAGCGTGCCTGTGGTTTGGACCCTCACAAACCTCATTCACAACATGTGCATGTATATCTTCCTACACACGGTAAAAGGAACGCCGTTTGAGACTCCGGACCAAGGCAAGGCCCGGCTGCTGACCCACTGGGAACAGATGGACTACGGGGTCCAGTTCACCGCCTCTCGAAAGTTTCTCACCATCACCCCTATTATACTGTATTTCCTGACCAGTTTCTATACAAAGTATGACAGGGTCCACTTCATCATCAACACCATTTCCCTGCTCACCGTGCTTATCCCCAAACTTCCTCAGTTCCACGGGGTCCGTCTCTTCGGAATTAATAAGTACTGAGGTTTTGTTCTTCAACACGAGGTTGACACACAGGGTGCTCATTGACTTACTCTGTGGAAATAAA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300227 lncRNA downstream 55348 3559543 ~ 3559788 (-) True G264545
TU300214 lncRNA downstream 71460 3543455 ~ 3543676 (-) True G264532
TU300204 lncRNA downstream 80893 3534040 ~ 3534243 (-) True G264522
TU300066 lncRNA downstream 93747 3427432 ~ 3521389 (-) True G264388
TU300060 lncRNA downstream 246610 3367261 ~ 3368526 (-) True G264382
TU300246 lncRNA upstream 10723 3631159 ~ 3631379 (-) True G264564
TU300247 lncRNA upstream 11857 3632293 ~ 3632514 (-) True G264565
TU300248 lncRNA upstream 12710 3633146 ~ 3633431 (-) True CI01000063_03628232_03633396
TU300249 lncRNA upstream 14012 3634448 ~ 3634747 (-) True G264567
TU300250 lncRNA upstream 15088 3635524 ~ 3635810 (-) True G264568
CI01000063_03426029_03462400.mRNA mRNA downstream 151238 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03373714_03386774.mRNA mRNA downstream 228362 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03296061_03306819.mRNA mRNA downstream 308317 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_02990060_02990880.mRNA mRNA downstream 623669 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 888602 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_03628232_03633396.mRNA mRNA upstream 7641 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03667811_03688065.mRNA mRNA upstream 47105 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
CI01000063_03695944_03716188.mRNA mRNA upstream 75508 3695944 ~ 3716188 (-) True CI01000063_03695944_03716188
CI01000063_03742908_03771506.mRNA mRNA upstream 122180 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
CI01000063_03772788_03776821.mRNA mRNA upstream 152180 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
TU298806 other downstream 888601 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1287417 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1436800 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1945060 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1542058 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1567967 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1629569 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1629623 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1629730 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010241 False 1473 mRNA 0.45 4 NC_007123.7 22230412 ~ 22238004 (-)
bowfin (Amia calva) AMCG00016740 True 10783 mRNA 0.46 25 CM030122.1 29201872 ~ 29225587 (-)