RNA id: CI01000063_03742908_03771506.mRNA


Basic Information

Item Value
RNA id CI01000063_03742908_03771506.mRNA
length 4999
RNA type mRNA
GC content 0.52
exon number 27
gene id CI01000063_03742908_03771506
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3742616 ~ 3771506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGGCTGAGCTGCATCCGCGCAGCGGAAAACTGATCGGTTTGTCGAACTCCAACAGAACCGCTCAACGGAATCAGCCGGTACAGGAATTTAATCACGGCCTGGTCCTCAGTCGGGAGCCGCTGAGGGACCGCGATGTCTTCACTGTCCGCATCGACAAGAAGGTTAACTCTTGGAGCGGTTCTATAGAGATCGGCGTGACTGCGCTGGACCCAGCCGGTCTGGAATTTCCCAGCAGTGCCACAGGGCTGAAGGGGGGCTCGTGGATCGTGTCCGGCTGTTCTGTGCTGAAGGACGGCCGCTCAGTCCTGGAGGAGTACGGTCGCGACCTGGACCAGCTGGGGGAAGGGGACCGTGTGGGGATCCAGCGGAATGGGAAAGGAGAGCTGCACTTGTGGGTGAACGGGCAGGATTGTGGTACAGCCGCCACTGGACTTCCTTCTCGTTTGTGGGCTGTGGTGGACCTCTATGGGAAGTGTACCCAAGTGACTGTGGTAAGCTGTGAACCCCCATCTGAAATGGAAGGGGAAGAGAATGAAGAGGTGGAGGATGAGATGGTGTCAATGCAAGCAGTGTCCATAATGGCAGATGCTTGCCGTAGCCACGATGATAGGGCTGGAGCTGTTGTGCTGTCTGCAGCTGGTGCTACAACAGCAGTGATGAATGGATCAGCGGAGGAAGTGCCTGAGGTGTCCAGGACGCACAGTCGGCCGGACAAATTTCCAAACAATTTTGAGCCTGATAGTGTTTTGACTGAGCATCAGTTATTTGATGTGTTCAACAATGCCATTGTATCTCTGTATCGTTCAGAGGATGAGGGTGGGGAGGACTTGGGAGTGGGAGGTGGAGGAGGTTGCTCAGACTCCTCGAGGGGTGGCACAGGAAGTAGCGGTGGAGGCAGAGGAACAGGAAGCGATAGTGGCATTGGTGGCGGAGGAACAGGCGGAGGCAGTAGCAGCAATAGCAGTCCGGCGGGGAGCTCTGGTGGGGCAGCGGGACTGGGGGTGGCCGCTGGCGGCATGACGACCAATGACGCACTGCTGTTCCATGAGAAGTGTGGCACGCTGATCAAACTTAGCAACAATAATAAGACAGCGGAAAGGAGGAGGCCGCTAGATGAGTTCAATAACGGAGTCGTCATGACCAATCGGCCACTCAGACACAATGAAATGTTTGAGATTCGCATCGACAAACTGGTGGATAAATGGTCTGGTTCCATTGAGATTGGAGTGACAACCCACAACCCAAATAATCTTGACTACCCTGCAACAATGACCAATTTACGCTCAGGCACAATCATGATGAGTGGCTGTGGGATTTTAACCAATGGGAAGGGGACTCGTCGGGAATACTGTGAATTCAGCCTGGATGAACTCCAGGAGGGAGATCACATAGGGCTGATGAGGAAAGCCAGTGGAGCTCTGCACTTCTATATTAATGGCATTGATCAAGGTGAAAGTGGCACTTCAGATCTCAGAAATAAGAGATTCACACTTAGTTCAGAATTTTCTAAAATACTTTTGCGAAATGATTTTATAGGGGTTGCAGCTAATCAGACTCCTGGCGTAGTGTATGGAGTGGTGGATCTCTATGGCATGGCAGTTAAGGTCACCATTGTCCACAACCATAACCATAGTGACCGTTTACGCCGCAACAATGCCATTATGAGGGCGTTGTCACCTGACGTGGGCCGGCCTCGGCCTGCTCTCTCATTGACTCCTGAGCCTGATATCCCGGACCGCTTGCTTTTCCATTCAAACTGTGGGCAGAAGGCTGCAATCATCAGTGATGGCCGCACTGCTTTACGGCCTCATGCGACGGATGACTTCAACCATGGCGTTGTGCTTAGCAACCGTCCGTTGCACTCCAATGAGGTTTTCCAGGTGCGCATCGACAAAATGGTGGACAAATGGGCAGGCTCTATAGAAATCGGTGTGACGACTCATAACCCCGCCTATCTTCAGCTACCATCAACCATGACCAACCTGCGCTCAGGAACCTGGATGATGACAGGAAATGGTGTCATGCACAATGGAACTACAATTCTTGATGAATACGGGCACAACTTGGACCGTTTAAAAGCTGGAGATACAGTGGGAGTTGTCCGAAAGGAGGATGGGAGTTTGCATTTCTTTGTGAACGGAGTGCCTCAAGGCCCCGCGGCCTGGAATGTTCCGCCCAGCGTGTATGCAGTTGTGGACCTGTATGGACAGGCTGCCCAGGCCACCATCATGGATGATATGGCCGATCTCCCTCCCTTGCCTGATGACAGTTCTGAGGGCCCTACTGCCATGTCTCCTGGTAGCCCATGTTCAGTCTCGGGGGCTACAGCTGCCAACGACCTGCGCTTTCATCAGCTGCATGGCACAAACGCAGTCATCACTAACGGTGGCCGAACGGCACTTAGGCAGAACTGCCGCAGCGAGTTTAATGATGCCATCGTTATTTCAAACAGGTGCCTTCGGGATGGAGAGCTCTTTGAAATTGTGATTCAGAAAATGGTGGATCGCTGGTCAGGCTCAATAGAAGCAGGAGTTACAGCAATCAGACCAGAGGAACTGGAGTTTCCTAATACGATGACTGACATTGACTATGACACATGGATGTTGAGTGGCACAGCGATCATGCAGGATGGAAATACCATGAGGAATAACTACGGCTGTGACTTAGACTCTCTGACCACGGGCTCGAGGATCGGGATGATGCGTACAGCTTCTGGAGACCTGCATTACTTCATCAATGGACTCGACCAGGGTGTAGCTTGCACTGGGCTGCCATCAGTGGCAGGGGTTGCACATCGTCTGCACAGCAAACATGGGAAAAATGTGGTGTTATTAGGAGATGGCTGCCAAGCACTGAGGGTCGGGGGATATGCTCATGGAATCGTCTTTAGCGCGAAGGAGCTCAAGACGGATGAGTTGTTTGAGCCCCCCGACCTACCATCCTGCCCTCTCAGCGGCCTCTCGCCTTCGCTTACCCAGCTCAGGTCAAAGGTCACCTGGGTTCTCGCCGGCTCTGAGGTCAGACGCAACGGAGTGCTGCAGAGACAGAACTACGGCTGCTCTCTAGATCGGCTCACGGTGGGAAATCGTGTCGGGGTGAAGAGATGCAGCGACGATACAATGCACATTCTCATTGATGGAGAAGACATGGGACCAGCAGCCACTGCAGTGGCGAAGAACGTATATGCAGTTTTGGACCTGTATGGAAAGGTGACGGCCGTGTCCATTGTCAGCTCCACACTAGTTGAGGATTCAGAAAGTGTGAAAGCGCCCTCACTCTCGTCCGACAGCTGCAGTGAGGGAGAGGAGGACAGCACTCCTGTCCGAGAGTGTGAGAATGAGCCTCCACTGGTTCCCACGGTAATGACGTTTTTAGAGAATCATGGAAAAAATATCCAGCTGTCCAATCAGAACCTGACTGCTGCCCGGGTATCCAGCTACAACCAGGGACTTTTGGTTACAGCGCAGGCTTTGCCCCGCCAGCAGCTCTTCCAGTTTCAGATAGACCGTTTGAATCCATCATGGACGTCCTCCCTGTCACTGGGTGTGATTGGTCATTCGCCAGATCGTCTTAACTTTCCTTCCACAGCTTGCTGCCTTAAACGCTCAGTCTGGCTGCTGCAACGAGACTCTGTTTTCCACAACTCGCTGAAGATTTGTGAGAACTATGGTCCTAACCTCGACACCTGTCCTGAAGGGACAGTTTTGGGGCTGTTGGTGGACAGCAGTGGTTGTCTCCATCTGTTTGTTAATGGCATGGATCAGGGCGTAGCAGCCCAGGACATCCCGAGCCCCTGTTACCCACTTATTGACCTTTATGGCCAGTGTGAACAGGTGACTATAGTGACAAATCACGTGTCGGTGGTTGGCGGGGAACGAGGAGACATGCATTGTCAGGGCGACATGGAGAAGGCTGATATGGTGGATGGTATAAAGGAGAGTGTCTGCTGGACGCCTCCTCCTGAGGTCAACCCCAATAAGACGTGCGAGTATCAGGCGCTATGCTCTAGATTCAAAGACCTGCTCACACTGCCCGATGGTTACTTTAATGAGGATGCTAAGTTCAACCTGTGTTACTGTGAGTCCTGTCACAAATTAAGGGGCGATGAGGCCTATTACAAGCGAGGGGAGCCTCCCAGAGACTACGCTCTGCCGTTCGGCTGGTGCCGCTTTGCACTCCAGATCAAGACCCACTGTGAAGTCTCCAATGCCTTCAAAAAGTGGCATATTGCGTACCATGGCACTAGTGTCGGCTCCCTTAGACGCATCCTGGACCACAACCAGCTCTTGTCAGAATCGTCCTCCATTTTCTCTTCCTCCCCGGTGAAGACAGAGGGTCACGGCAGCTACGGGGAGCCTGAAGAGAACAGCGCACCAGAGCGAGAGATTCCGCGTGTGCAGCTTTCTCCAACAATGCGCTACTCTGGCCTGGAGGCCTTTGCCCCCAAAGTGCAGCCCAGGTTGGCTTCCAGGTGTGCGTACGACCAGGCTCGTACAAAGTGGGGCCGACGTCGCTGGGGATCAGCGAACCCCTTGACCCTCGATTCAGCAATGCAGAAATCGAGTGGATCACCAAGGAGAAAGGAGGCACGCTCCTGTACGGCCTGCTCATACGGGTGGAGTAAAAAGAGACTCGAGCGAGGATATCGGCATCATCTTCCTCACTATCAACCAAATTTCAGCGCTGAGGCGTTGAGGAGTTAGCATTGTTTTGCTGCCCAGACTCATTCATCTCTGCATGTTTCAGACATACTTTTGTGTTCGTTGCATTTTGAAGGATGGTGATGATAATCCCCAGAGACAAAGACACTGCCTGCACTTTATGTTTCGGACACTGGTGGGCGATTTTTAGTCTTTCTCATTAAATTCACTTGCTTAGCAGGCTCTCCATTATTTTTTTTTCTGTCTCTTCATACATCTAAATCTATGTATCATCCCCTCAGATTTTTTTTTTTTTTTTTTTTGCGCTTTTGGAGCCTGTTCTCACAGAAATAAA

Function

GO: NA

KEGG:

id description
K16777 NEURL4; neuralized-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300082 lncRNA downstream 78715 3661599 ~ 3663901 (-) True G264404
TU300264 lncRNA downstream 92884 3649494 ~ 3649732 (-) True G264582
TU300263 lncRNA downstream 96040 3646365 ~ 3646576 (-) True G264581
TU300262 lncRNA downstream 97216 3645165 ~ 3645400 (-) True G264580
TU300261 lncRNA downstream 98179 3644140 ~ 3644437 (-) True G264579
TU300084 lncRNA upstream 25717 3797223 ~ 3800537 (-) True G264406
TU300275 lncRNA upstream 30545 3802051 ~ 3802307 (-) True G264593
TU300061 lncRNA upstream 33931 3805437 ~ 3807805 (-) True G264383
TU300278 lncRNA upstream 51995 3823501 ~ 3832858 (-) True G264595
TU300288 lncRNA upstream 190021 3961527 ~ 3964475 (-) True G264602
CI01000063_03695944_03716188.mRNA mRNA downstream 26428 3695944 ~ 3716188 (-) True CI01000063_03695944_03716188
CI01000063_03667811_03688065.mRNA mRNA downstream 54551 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
CI01000063_03628232_03633396.mRNA mRNA downstream 109170 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03615200_03619061.mRNA mRNA downstream 122180 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03426029_03462400.mRNA mRNA downstream 278718 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03772788_03776821.mRNA mRNA upstream 1110 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
CI01000063_03784602_03791834.mRNA mRNA upstream 12088 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
CI01000063_03879695_03885921.mRNA mRNA upstream 107785 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_03894170_03896007.mRNA mRNA upstream 122664 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_04056574_04087071.mRNA mRNA upstream 284690 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
TU298806 other downstream 1016081 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1414897 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1564280 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2072540 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1390988 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1416897 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1478499 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1478553 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1478660 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010249 False 6009 mRNA 0.50 29 NC_007123.7 22450548 ~ 22509072 (-)