RNA id: CI01000063_04896882_04899387.mRNA



Basic Information


Item Value
RNA id CI01000063_04896882_04899387.mRNA
length 2374
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000063_04896882_04899387
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4895763 ~ 4899991 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAATGCCTGTTTGTTGGAGTCGCCAGGAAAACAATGAGGGTGATTATGGAACTCGTGAAAGTGTTTTAACATTATTAGAGTGAATGAAAGGCTCGCCACACCTGAGAGCACTGTGTTTTCGTTCTTTATATTAACCACTGTTGTAAAAGCGGTATTTAGACGTAAACCATAAAACAGGAGGGCGGACAGAAACAAGCTTTGAAAGGGTTCACAAATAATTTGTGAGAACTGAATCAGTCACAACCAATAAAATAAATATGAATAGGGCTGAGCTTTCATTCTGTTATATGCCCTTTTGATAGTGATGACTATCCAGTGAATCTGGTACATATTGTCTACTGTTGCTATGGAGACTGCTTTTTGAATCTTTGTATAAGGGTTTGCACTGTCATATCAAGACAGCCCAAAAACAGATGATAATATGAAAGCATATTGATTGCACATATGGGTTTTAATCCCCATTTCCAACAATATGTAAAATGTAAATTATTACTATATACATCCAGTAAAAGTTCTGTACTGCGCAGAGAACTTTATTACTTACGATTCCCTTTATTGATATATAATATAATATAATATAATATAATATAATATAATATATGAAAAGTGCTTTTACCTTAACCAGAAATTATGCAAAAGACTTATCATTATGCCAAGGGCCCACATTTTGTTACGGGCTTCCTTTTTTTTTTTTTTAGAACCAATCTTGTTCATAACTCATACTTTTGCTATTGACATCTACATCAAGCTTATTTGATCATCTGCAGAGCAATTTTCATACTCGACACATACCTACAAATGCAAAACTGACAAATCAATGCTATAGGCGCTGTTCTGACAAATGGTGACAAAGTGTTGTTCTGGAATCATCTTTCACACTTCCAAGCATAAGCGTGAATATACAGTAGCTACATAATTTCAAATTTACTTTGAGGAGACTGAAACCCAGAGATGTTCGTCTACATTGTGTGCTCTGAAAGCAAAGGGGGTTTTATTTACAGAGGAAAGAATGAAGGATAATTTCAATAGCCTTAAAGAGTTTCATTTGCATAGTCCATAATTTGCATATATAATTTCTCATTAAAACTGAATCAAACTTTTTAGAAGTTGCTGAAATGGCATCTAAACATCAAGTTAACATAATTAAATTTGCTCCTCGTGGTTTTGTGACAGGCACCATTTCCGTCAACTCGATCCGTACTCCCTACAACGCTCCCGGTGAGAGTGAGATCCTGGACTTGGACGACATACTCTACCTGGGCGGCCTGCCAGAGGACCGCGCCGGTCTGATCTTCCCCACGGAGGTGTGGACCGCTCTCCTTAACTACGGCTATGTGGGCTGTGTGCGAGATCTGTTCATGGACGGCCAGAGCAAGGACATCCGGCGGATAGCGGAGGCTCAGAGAGCGGTCGGGGTGAAGCCATCCTGTTCTAAGGAACCTCCCAAACAGTGTCTAAGCAACCCCTGCCTTAATAGCGGCACCTGCAGAGAGGGCTGGAACCGATATGTGTGTGACTGCTCAGGGACGGGCTATCTAGGTCGCTCCTGTGAGAGAGAGAGAGCCACTCAAGCATGGATTATGTTTTTGCCTTTTGTCTCCATCCCTAGCAGAATTTTAATTCTGTTGTTTTTCCAGATGAACAAAGCGACCAGCGTTCTCCGCCTCCCTGTCAAAAAGGGAGTCAGCGATAGCTCAAAGTCCACATCCAGTTATGCATTTCCACCCCTCATAGATGCCTCCTTATATTCTGGCAGGCCTACGTGAAGTGGTTTAAGCTATAGTGGCTAATTCTTTAATGGAAGAGCATCTCTTAAGCTTGTTGCTGTTGTCTGGACACTGATATCACCCTGCAGCAAAGATGCTGCTGTGGGAAAATAACAATCAATTACATGCGCATTGTTGAAGCTCTGTGCAGGAATTATGGAAATGATTCAGTCAATTAACCCATCAAAGATGGGTTGCTTTGTCATCGCCCAAGCAAATTTCACCACAAACAGCCATCAGAAAGAGAATGGTGCAGTCTGGTGCAGTTTTATTGGGTGTTGCCGGCTTCCTCCAGATGCACATTTATAAGATTCCAGTCACAGAAAACAGTTCTTTGTGAAAGGCTAAAATGGAGAAATTAGATGAGACACACAGAGAAAGAGACAGGAAGACAAAAAGAGACAGGCGACAGTGTTAATCTTGTCAGCAAAATTACTAATGGAAATGTTTGTTAACAAAGGGTTTTTTAATGTGTAAATGATAATGAAGAAGAGATGACAAAGATGCTTAATGACAATAATTAAGCAATTTTAATTAAAACATGCTTAAAATATGAGGCAAAAATAACTAAGATATTAATGCAGTAAAATGGTTTTAGAAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU300670 lncRNA upstream 23201 4856896 ~ 4872562 (+) True G264946
TU300677 lncRNA upstream 38899 4758404 ~ 4856864 (+) False G264946
TU300679 lncRNA upstream 38899 4819572 ~ 4856864 (+) False G264946
TU300668 lncRNA upstream 59898 4819572 ~ 4835865 (+) False G264946
TU300709 lncRNA upstream 139642 4755714 ~ 4756121 (+) True G264960
TU300749 lncRNA downstream 114358 5014349 ~ 5014586 (+) True G264997
TU300756 lncRNA downstream 124131 5024122 ~ 5024402 (+) True G265004
TU300757 lncRNA downstream 127154 5027145 ~ 5027379 (+) True G265005
TU300687 lncRNA downstream 170460 5070451 ~ 5073098 (+) False G264948
TU300686 lncRNA downstream 171585 5071576 ~ 5074125 (+) False G264948
CI01000063_04878276_04890999.mRNA mRNA upstream 4744 4877614 ~ 4891019 (+) True CI01000063_04878276_04890999
CI01000063_04807641_04810737.mRNA mRNA upstream 84575 4807294 ~ 4811188 (+) True CI01000063_04807641_04810737
CI01000063_04670608_04680828.mRNA mRNA upstream 214862 4670608 ~ 4680901 (+) True CI01000063_04670608_04680828
CI01000063_04633004_04663849.mRNA mRNA upstream 231748 4632009 ~ 4664015 (+) True CI01000063_04633004_04663849
CI01000063_04594405_04629754.mRNA mRNA upstream 265311 4594405 ~ 4630452 (+) True CI01000063_04594405_04629754
CI01000063_04927483_04988999.mRNA mRNA downstream 27492 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_05034462_05041925.mRNA mRNA downstream 134471 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_05083449_05083858.mRNA mRNA downstream 183458 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05108936_05112439.mRNA mRNA downstream 208945 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05183819_05187667.mRNA mRNA downstream 283628 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
TU297890 other upstream 2181246 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2652798 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3750756 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4185209 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4228381 665800 ~ 667382 (+) True G261984
TU301223 other downstream 1013792 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1435287 6335278 ~ 6335601 (+) True G265462

Expression Profile