RNA id: CI01000063_05189361_05189645.mRNA



Basic Information


Item Value
RNA id CI01000063_05189361_05189645.mRNA
length 1069
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01000063_05189361_05189645
representative False

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5188403 ~ 5189645 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTGATCCTTATGGGAAATCTGGATTTGCCACTTGCAGAATATGCAAAAGCTCTGTCCATCAGTCTGGTTCACACTACTGCCAGGGATGTGCCTACAAGAAAGGAATTTGTGCCATGTGTGGGAAGAAGGTTCTTGACACCAAGAACTACAAACAGACCTCAGTTTGATTTATTATCTTTTTCTGGAGGTTTTCGTGTTTAGCTGAGAAGGCAATGTTTGTGAATGATTATGTTGACTCTTCCATGTGTTGAGAATGATCATTTAACTTCACAAAAGAGTTTAATTTGCAGTGTTTTGTGTAAAAGTGCTGCCAAAGAAGTGTACTGGATTATGACTGTATTTATTTGAAAATATGTCCATGGTATTTTTCTCTCACTTAACCTTAGAGCAATATATTGGCTTGCACTGTTTGAACAATGTAGATGCCTTCTTTAAGTATATTTGCTGGAGAACATGTTTTGTAAATGTTCTTATTCATTTTTTTAGTAAATAATTTATCATTTTTAATACTACCAAGCATAATGAAAAAAATCAGTTCTCTTCATGATAATTTATTTCTCTTTTTAGGCTTATTAGTCATTGGACCTTATTCAACTTTAGACTTTGACTTTTAAATGTCACCTCTTCCCCAATTAAGAAAAATATAGATATTATCTCTCTTGTTTGAAGTTATATTTTTTTCTATCGTTTCCAAGGCAGTGTCACTACAGCAGATTCTAATGTAAATATGAAACAAGTAGACAGTGACCTGCCAATATAAGACCGCTACAAGCTCAGTGTACAGTGATGTTTATAGCCTGTTTCCACTTCTTACTGTCCCGCCATTGGTTCTTTTTGTGAACACTGTTGCAGATGTTTTCTGGAAATCTGTTTGTCGTTTCCTTTTTCAGTTATCATTTGAAATTATATAGTTTTGGATTTCTTTTAGATGTCTCTTGAACCCACCCAGACCGTTGCGGATTTTCTTACAGTCTGTTTGATTGTTTTGCCATATTTTTAAGTGCAAGAAGGCACAACATAGCAATACTTAGATACTGTATAATATCATTCCCTTAAGATCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU301500 lncRNA downstream 63012 5125257 ~ 5125483 (-) True G265635
TU301406 lncRNA downstream 75391 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA downstream 75391 5109364 ~ 5113104 (-) True G265564
TU301490 lncRNA downstream 87509 5100356 ~ 5100986 (-) True G265625
TU301485 lncRNA downstream 161647 5026267 ~ 5026848 (-) True G265620
TU301519 lncRNA upstream 32091 5221736 ~ 5226842 (-) True G265653
TU301540 lncRNA upstream 74497 5264142 ~ 5264343 (-) True G265672
TU301532 lncRNA upstream 74847 5264492 ~ 5281847 (-) True G265665
TU301566 lncRNA upstream 136487 5326132 ~ 5329568 (-) True G265693
TU301578 lncRNA upstream 160221 5349866 ~ 5350103 (-) True G265705
CI01000063_05160162_05161742.mRNA mRNA downstream 25219 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05085075_05095432.mRNA mRNA downstream 92968 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05070661_05081280.mRNA mRNA downstream 107215 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05056169_05057789.mRNA mRNA downstream 130640 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_04834309_04848552.mRNA mRNA downstream 339775 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05198199_05217488.mRNA mRNA upstream 8521 5198166 ~ 5217644 (-) True CI01000063_05198199_05217488
CI01000063_05248902_05250362.mRNA mRNA upstream 59052 5248697 ~ 5250625 (-) True CI01000063_05248902_05250362
CI01000063_05252331_05253850.mRNA mRNA upstream 62249 5251894 ~ 5253850 (-) False CI01000063_05252331_05253850
CI01000063_05257128_05262520.mRNA mRNA upstream 67313 5256958 ~ 5263331 (-) True CI01000063_05257128_05262520
CI01000063_05304502_05306803.mRNA mRNA upstream 114794 5304439 ~ 5306803 (-) True CI01000063_05304502_05306803
TU298806 other downstream 2461960 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2860776 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 3010159 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3518419 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301419 other upstream 60360 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 60414 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 60521 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301417 other upstream 61190 5250835 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301422 other upstream 61190 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850

Expression Profile