RNA id: TCONS_00018971


Basic Information

Item Value
RNA id TCONS_00018971
length 3497
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_008533
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25395901 ~ 25399574 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgttaaCATGTTTTATTCCACAATTAACAATATAAAGTTCATATACAAATattacttacaaaacaataattaatcaaaataaaaacacaattatatacattttagacACAATTGTTTAAAACTCAGCTGATTGGATTCAACATTTGTTCTGCTTTCGATATGGGCatgaatatcttttttttttaattatggctTTGGAAAATACTGCAgctcaataagttaaggcaactcaaaccgtttgaggaaaccgattgctccAAACCACGAGtgtaaaaactaatctatatgagtactgtgaacttgctctattttagttgaagtaatgaagtatttaattaacttgtTACTTTCAACacggagttcaaaactcttttgagatgagaattaactttcagtcaattgagttaactacactcatttcatttgataaaattgaccgttgggttttacagtgtagatttctAAAAATCAGATCAACAAAACATCAGCAGTTTATGTTTCACCATTCACCAAACACAGCACATAACTGCACTCTCAAGTAAAGGGCAACCATACTGCTGtgaataccccccccccccccccttaaaaGTCATAAGTCACATTGGCTTTTTGTCAGGAACCAAACATTACACATTTACCTTCTTCAATACATTGAGAACTCGTTACAGGAGCACATACACAAGCACAAGTCTCAATATGAAGCTGCCAATAGTAAAAAACTAAACTACACATTTTTTCTGTTACTACTTCAGTGCAGTTTTACTTTTCAATGTTTTCCCACTTGATTTCAAGTTCCTGCAATAGCTTGGACATGAACAGCACATTTACTTCCTTAattgtgaatcttttcttcaatCAGCAATAAGGCAGAAGTGTAGCAGATTAAAACATTAGGAATAAACTTTGgtgctttaaaacaaaaagtttggTGGCACAAGTCGGTGATGCTACTTGTAGTTACAGTGTTAACATTCTCACCGGACAGACGGCTCATTTTTTTGCCAATAATAATCACACTTCTCTGGACAATCATATTTGCACTGAGTACATGAAATAAGGCCAAACCGATAAATGCCTTTAGTAAATCTGACCATTCGTTGTTTATCATCAACAAAATCACAACATTTTGCACAAGACATCATTCAATGTTGTTTTGCATTTGACTATAACAAGAATATTAAGtccaaataaattacaaatatacaaaaacacatcaaCAATAAGTAAACAATTACaagctttatttatatatatttaaaaaaaaaaaagatcagcaCATTTTAAGCAATGTAAGTACTGCTTTAACCATCACCTGTTCATAGACTAGGTGTTAGCATGAACTAACATGAGgtctctgttgtgtgtgtgtttagtgccACCTACAGGCATGATTTGTGCAATGACAGTCCTGTCAGATCTCAGACCTCACGTTGCAGTTTTAAAGAGCAGGAGTGCTTTAAATGCTGATAAAGGTTTGTGGATCCACCAGGTAAAGAGTGAACAGTAGTGTTTATCCAACAAGGTAAAACTAGTCATTTTTCTATGTGAAATCATATCTCAGCCTTGTGGAGAATACAGTACTGAGCATTGATCAATTTGGGGTTTTGTGgtattgacaaaaataaataaatgatatataaataattgttcttttttttttttttttggcaatcaGTTTGCTGCATTCTCTTTCATGCTCGCGCATTGGTTGGTTTATATCAATGAtcacaaactcaattcctgaagagTTGGAGCTCTGTATAGCTTAGCtttaaccacctccaactcacattTGCCTAACAGTCTAGTAtgggggtgcccaaactcagtgctggagggctggtgtcttgcatattttagtttcgaccccaattaaacacacctgaaccagctaatcaagctctttctaggtataatAAGAATTCCAAGCAAGTTTGTTGaaggaagttagagctaaactatgcaggacaccggctcttgaggacagagtttggacactcctgctctAGCATTTTGAACACCTTGAGGAGttggatcagttgtgtttgattagggttagagcaaaactgcagagctgtggtGCACCAGGAATGCAGTTTGAGATCTATGGTTTGTATGAAAGTCCTTACATGCcacgaaataaaaaaaaagtagatttttattGCAATGTTAAGTTTACAGACTCATATTTGGTAGTTAAGACAGAATTCTGTGAGGAATACTAAGGGGAGGGGGAGGGGGcgttaatattaaacaaaactaTATATCTGCAATTCCAACTTTTCTACAAATTATAAAGAGAGGGGGGAGAGGAATAAATTCGTACAATTGAAagttaaaaactgaaagaaagaaaaaacattctCAGTTGCATGTTATAAAGGcagaattatttgtttttattacagaTTTCTgattaaaagtaaaacattttaatttgcaattagctttatttttttttattcagtggcaCAAATAAGGCTTCCATTAGTTTGGGCCTGTCATGGATACATGTATTAATGACATTAAAACCACCAGCAGATGGCAGCAAGCGGCTGTCTCAATGAGGGATTCACTGAATCAGTCATTCAAATGATTTGCTACAAATGgctgattcatttaaaaatgattcgTTTAAAGTGACTGCCTTTAAGAACAGATCACCAAATCCTTAGACTTAAATGATTTGCTTTAAAAAGCAAGTGatttagaaacaaacaaaaactgcttaACAGATGCACAAATGTTCTGTTCATACTttgttttagaaacatttttcaTTGGGAGAACAGAAACACACATAATATCATGTGTAAAATGTTGCTCgatattaattttcttgtttgtTGCATTTGTGTACTTGAGTACAGGGAAAATGATTCTCTCAGTTTCAGTTGTGTGACATAactataaccaaatcataaatagaAACCAAAAAACCCACACAGGGATATTTTGGCTAACATAGCTAGAACAATCTAATAGGCTTCGTCACATTTGGAGTCTTAAGACGTGGAAATGAGTGACATGACATTATGACAGATGATAAATATTGCATGTCACTTCACGGCGCTTGATGTCCCTTTCCACTTAATTTACTACAACTAATTAGTGAATTTGTGCTCAATACAGCCCTACagaatttcaaaacatttaaagggacagttcacccaaaaacaaatcATCTGCCACCAAACATATCACATATCTTCAGAATACTTTGATGGTCTTCTGTTACAGTTCTTTAGGGATCACACACAGCAATCATTAACAGAATAAAGCAGCCTGGACATTCAAATAAACGTCTTTAAGAAATGCCTTTGAGATTTTGAGCAAACTGTCACTTTAAAACTGAATGATAATGATTCTGCTACAAGCTCATGAGGTAGCAGCAGAAGGTGTTAATGAAAACATTCACAAGTGAACATTTTGCTCATATATGTTATATTTTGTGTATGGGTGTATAAATAtctatatttacatattaattcAGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018968 lncRNA upstream 18407 25370567 ~ 25377494 (+) False XLOC_008532
TCONS_00018969 lncRNA upstream 18407 25370731 ~ 25377494 (+) False XLOC_008532
TCONS_00018970 lncRNA upstream 18407 25370791 ~ 25377494 (+) True XLOC_008532
TCONS_00018967 lncRNA upstream 186059 25208392 ~ 25209842 (+) True XLOC_008531
TCONS_00018966 lncRNA upstream 300603 25094836 ~ 25095298 (+) True XLOC_008529
TCONS_00017066 lncRNA downstream 128735 25528309 ~ 25529425 (+) True XLOC_008538
TCONS_00018972 lncRNA downstream 169363 25568937 ~ 25570599 (+) True XLOC_008539
TCONS_00018973 lncRNA downstream 496891 25896465 ~ 25902650 (+) False XLOC_008543
TCONS_00018974 lncRNA downstream 1276411 26675985 ~ 26680699 (+) True XLOC_008549
TCONS_00017087 lncRNA downstream 1897102 27296676 ~ 27300833 (+) True XLOC_008552
TCONS_00017057 mRNA upstream 226288 25156121 ~ 25169613 (+) False XLOC_008530
TCONS_00017058 mRNA upstream 226288 25156382 ~ 25169613 (+) False XLOC_008530
TCONS_00017059 mRNA upstream 226357 25158104 ~ 25169544 (+) True XLOC_008530
TCONS_00017052 mRNA upstream 370085 25024685 ~ 25025816 (+) True XLOC_008524
TCONS_00017048 mRNA upstream 558246 24795536 ~ 24837655 (+) False XLOC_008521
TCONS_00017060 mRNA downstream 39140 25438714 ~ 25448626 (+) False XLOC_008534
TCONS_00017061 mRNA downstream 39532 25439106 ~ 25443025 (+) True XLOC_008534
TCONS_00017062 mRNA downstream 52518 25452092 ~ 25486010 (+) True XLOC_008535
TCONS_00017064 mRNA downstream 89832 25489406 ~ 25499518 (+) True XLOC_008537
TCONS_00017065 mRNA downstream 128716 25528290 ~ 25542592 (+) False XLOC_008538
TCONS_00017050 other upstream 433649 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017035 other upstream 712611 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017027 other upstream 826839 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 1945215 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 2017713 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00017063 other downstream 70155 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 235767 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 268013 25667587 ~ 25667701 (+) True XLOC_008541
TCONS_00017074 other downstream 497872 25897446 ~ 25897539 (+) False XLOC_008543
TCONS_00017075 other downstream 498141 25897715 ~ 25897799 (+) True XLOC_008543

Expression Profile

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