RNA id: TU301419


Basic Information

Item Value
RNA id TU301419
length 2761
RNA type TUCP
GC content 0.38
exon number 3
gene id CI01000063_05252331_05253850
representative False

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5250005 ~ 5253940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAAACAAGGAAAAAGCCGGTTGAGTTGCCACATCCCGACGGTCACTCTCACCTCGTCCTCGCCGGTTACCACACTAATTACCAAAATGTATTACAAATTTAGTGGGTTTACACAAAGACTGACGGGAGCCGTGTCAACCTCCGCTTACAGCCCTCAGGGCTTGAGGTCAAATATACCTTCTGAATCCCCTACCATCATCTTTGCCACCCCAACTAAACTGGTGTCTGAGTCAGGTGCTGCGGTGGAGTATATGGGTGCCAACAAGGTTCCAGACCTCCAGAGAATATTTCAGGCATCAGAAGAGATTCCTGTCCATCTAAAGCGAGGTGTTCCAGACAGACTCTTGTACAGGACCACCATGGCTCTGACAGTCGGAGGAGCTCTCTACTGTCTTGTGGCTCTTTATATTGCAGCACAGCCCAAAAACAAGTGAACTGTACCCATCTTCTTTTCACCAACTCACATCATCAGCGATGTAACTTTGTGCATTTATCATGAATATTAGCAATATGCCTCCGAGCATCAATCACCATGAACAGACACTCTGTCCTGAACAAAGCTTCTACTACACAATGCTGTTTTACTTGTGTCCTGTATCAGTTCTTCTTACAAATGGGATGCTGTTAGTTGTGTTTATTAGAACAGCTGTTCTCAACCTTTGTAATCCCAAGGTTCCCGAAAGTCAATATTTGGTGCCCGGTCAATGCTATTATTTGACATATTATTTTGATGTACCCTCAAGATGACTTAAATTTTAATTAATCTAAAAAGTGATTTCTAGACCTGGATGAGTCATGTAAATATTTTTTTTGTTTGTTTAATTTAACTCATGAGTTTCTTCAGATAAAAAAAAAAAATGGTTCAAATAAAAATTAAGATTTTGAATAATATTAATCATTTTGTCTGTCTTTTTGACTTGTTAAATTTTAACAGTTTATTACATATTTTTAAGACATTTTGGAGCTTACTGAGACTTTCTGGTTGAGAACCACTGTAGAGTCCAAGACTTATAGTCCTATAGCATAGAATAAACCCTTCACTCTTAACGTACAAAGTTAAACATTGTCAAAACGATCCCCGTTCACACGGATCCACAAAAAATGCTGTATTATGCTGCCAGGCCAGTAGTTGGCAATGTCACTTTGTCAAAAAACACTACACGCCTATAGACTGAGCACGTAATACACAGGCACATGACATCACCATTTTCACAAATTTGTGTTTTTGTAGCTTACATTGAGACGATAAAGGTACGGTTTTCCAAAACTTTCTCTTTTTCAAAAGTTTGTGTTTTCAGGCCCCCAAAACGCAGTTGTTGTGTAAATGAACAGCCAAAACGTGTAAAGTTTTCCATTTTTAGTTGAAAATGGTGTCATGTAAACGGCCCCTCAGCTCCATTTATACCTCATCAGCACAGGATTTTTTATTTCAGATGTGTGATGGCTGACAGACCGTGAAAATCAGTTTTGGTAATGATTGAAGAGGGTTGTGATGTTGGGAACAGGAAAAGAAAGAAAAATAGGGTGAGACCTCACACTTTTCAGTAGTGTTGATTAGTTTAATGTGTTTGTTACACACTTAGGCATAGTGGTGTCTCACGGTGAAGCCCAATTAAGAATGAGAAGTCTATATGAAGTGTTTTAACAATTGTACAAGCTGTACAGAGTATTCCAGAAATGGAACCATATTGAAAAGAATCACAGACGAGGTGAATGCAATTGATGAAATGCACATTTCTGCCACTGAATGCAATATTATCATACGGTATGGTCATATTGAAAGCATCCAAGGATTTTTCATGCTGGCATGCCTCTCATATGCAGCCCTTTCTGAAGTATTGTAAAAACTGTTTGTGAAATGGATTATTTTTTCCTTTAAGCTCACTGAGATATACATTTAATTTAAAAGAATATAGAACCAAATTAAAAAACATGACCTTCTAACATTCTTGTTTGCTTCCTTTTTATCTTTTTGAAGTCTGATATTCAGTGCAATATTTTATCAGAGATAAGAAAAAACATCAAAGCATTAAGGATAAATTGATTACATGCTTGTTTTTCCTTATTTTCATGTTGTCAGATATCTGACTAATGTGTACAGTATATAAGATCCCTCTTGAAAAGCTTTGAATTTCCTGCTCAGGCTGTTCACATGGCAACAAGGCTATAGGAGACCTTGTACACAAAAGGACTTCCAAAAAATCCCTTTGAATCTGTCTCTTTTATGACCAAAGCACTGTAGAATTGCGAAGAAACAATTTCTATTGTTTCGAAATCCTATTTTTCCACATTTCTGTATAGTCGGAGGTAATAACACAACATGAGGCTGACAGACTGTCTAACTGCAGACTGGCATTTGATATGCTGTCAGAGCACAAAGCAAAGTGAAACAATCTATGACAATGAGAGGTTGTGATTCACTCGGCATCATCTCTGAGCCGCTCTGCTTACTACTGAAGACTCTGGCAACTGCACGGTTCATTTTAAAGAGGTCAATAATCTCTACCAAGTACAGCTGTTCTAGTAATAGCCTCGTGGGTAAGACTTTTTCCAAGACAATCAATATTAATATTTTCTTTTATGAACCTGTGACGTGAAAAGCCATGGCAACCACAAGACTCTTTCCAGGCATCCACATATTTCATAGGATGTAGTTAATTATGTTTACTATTCATCTCTCCATGACGTGCATTTCTTTAATTCACTTGCTTACCCTTTCTCTTGATCTCGCTTGTTTCCCTAATTTAGCCTGAATGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301519 lncRNA downstream 23163 5221736 ~ 5226842 (-) True G265653
TU301500 lncRNA downstream 124522 5125257 ~ 5125483 (-) True G265635
TU301406 lncRNA downstream 136901 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA downstream 136901 5109364 ~ 5113104 (-) True G265564
TU301490 lncRNA downstream 149019 5100356 ~ 5100986 (-) True G265625
TU301540 lncRNA upstream 10331 5264142 ~ 5264343 (-) True G265672
TU301532 lncRNA upstream 10681 5264492 ~ 5281847 (-) True G265665
TU301566 lncRNA upstream 72321 5326132 ~ 5329568 (-) True G265693
TU301578 lncRNA upstream 96055 5349866 ~ 5350103 (-) True G265705
TU301594 lncRNA upstream 106947 5360758 ~ 5362072 (-) False G265709
CI01000063_05198199_05217488.mRNA mRNA downstream 32361 5198166 ~ 5217644 (-) True CI01000063_05198199_05217488
CI01000063_05189361_05189645.mRNA mRNA downstream 60360 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
CI01000063_05160162_05161742.mRNA mRNA downstream 86729 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05085075_05095432.mRNA mRNA downstream 154478 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05070661_05081280.mRNA mRNA downstream 168725 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05257128_05262520.mRNA mRNA upstream 3147 5256958 ~ 5263331 (-) True CI01000063_05257128_05262520
CI01000063_05304502_05306803.mRNA mRNA upstream 50628 5304439 ~ 5306803 (-) True CI01000063_05304502_05306803
CI01000063_05353701_05355458.mRNA mRNA upstream 98947 5352758 ~ 5356284 (-) True CI01000063_05353701_05355458
CI01000063_05473346_05474995.mRNA mRNA upstream 219527 5473338 ~ 5475757 (-) True CI01000063_05473346_05474995
CI01000063_05616519_05617045.mRNA mRNA upstream 361995 5615806 ~ 5617073 (-) False CI01000063_05616519_05617045
TU301411 other downstream 59388 5190050 ~ 5190617 (-) True G265565
TU298806 other downstream 2523470 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2922286 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 3071669 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3579929 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301675 other upstream 292890 5546701 ~ 5546719 (-) True G265781
TU301878 other upstream 1034347 6288158 ~ 6290946 (-) True G265976
TU302824 other upstream 2035684 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 2035917 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 2035917 7289728 ~ 7290224 (-) True G266797

Expression Profile