RNA id: TU300918



Basic Information


Item Value
RNA id TU300918
length 1706
lncRNA type sense_over
GC content 0.35
exon number 1
gene id G265149
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5608129 ~ 5609834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATGTTTAGCAGAATGTTCACGCTGCTCTTTTTCATACAGTGAAAGCTTATTGTGACCAGGAACAGTCAAGTTCCAAAAAAAAAAAAAAAAAAGGTTGACCTCACCTTAAATGTTTTTTACTTATGATTTGAGAAGCCTTTCAATATTGTGCATAAGTTACATGGACTACTTTTGTTATTTTTGGAACATGACTGCCACTGGTCAAAATATGTTTTCATTTTTTGGGAAAAGCATTGTTAACATTATACAAACCTTCTACTTTTGTGTTGCACGTAAGAAGGTTATACCAGTTTTGGAACGATATGAGGGTGAGTAAATGATTACATAATTTTCATTTTGGGCTGAAATAACCCAGTGACAGAATATTATGCTGACTAAAAATATAATAAGTTTTGCTGACACAAAAAGGGAAGAGTTAATTATATGTCAGCATGTAGTACGTCTCAGTTCCTTTGAATCATGTGCCGTAAGAATCCCACTGCAGATACCACAAATAATTGCTCTCCATTACAGCTGTGAAATCTGTCGACTTTACTATGAACCTGTACTTTTATTCTCTAGGATTAAGATTTAGAGTCTTACAAATAAAGCTGAGAGTGGTTTTGTCGCAGTTTTTGGGTTCTGATGAATTTCAGTCTTAACCACAATGTGGTCGAGACTCCTAAAATCAATCAGTGCAGCCCAGACTCCGGGGGGAGGGGATTCTCATCAGCTGTTGCTTTGGGATTACTGTCTCACAAAATTACAGTGTTCTTTTTAAAGATTTACTGGCATGTGTAGAGAAAAGACGAGAGAAGATGCTGTCACGTGTTATGGATTTAGAGCAGTGCAGAGAAGAGATAGCCTAGTCATTACTATGAAACAAAGCCCCAGGAGAGGAATTGATTACATAATTCTGTTGCACTGAGTTGATATGACTGCTTCCCATTTGTCCTTTTGTAGTGTGAGCAGCCATATGCATTTCCCCTTTCGACATGCACATGGCAACTTGCCAGTAATACCCTTTGATGTGGTGAAAATCTTGCAAAGATAAAAATTTAGAGCAGTGGTTCTCCAAACTTTTTGACTGTTGTCCAGCAAAATATTCAAAGGCTGTCAGATATTCAAGTACTTTTACTGTAATTATGACAAAGCTGTGTGTTTTCAAACTTTTTGTATAAACTGAAACTAGGAGTATTGATATTAATTATTAAATAATTAATTTTGTGACCTCAGAAGTTTCAAGAACTGTATACTCTTCAATTAAAAACAAGTTATTGAGTGGGAAAAATAAATATATTTTTTTATTTTACTATTTTTATTTCAGAATTTGTTTATTTTTACTATAATATTATATAAAATATTTTTTTTAGTTTACATCTTGGTTTTACATGTTTTTTAGCATCAGTGGTAAACTTGATGGTAACTAGGTTTTGCTCTACAACTTAAATTACACTAATATTGAAATTGCGAATTTTTAAGCTGTTATGTTTATTTAACAAGATAAGACAGCTTGTGGTGCGAGTGTGTGCAGTTTACATTGTAGAACAAAATGTTAAAGTATAGTCAACTTAGGTTTACCGAAGACCTTATTTTACTCATAAATTGAAAAACCCCATATGAAAAGTTTGAGGGAACCAGTGTTGAATTAGTCTTCCGGGTTTTGACGTCATCCCTGCCCCACTCTATTTAGAGCCAATGCTAGAGCTGGTCTATGCAAACCACNNNNNNNNNNNNNNTGCTACAGTAATGAAGAGCGTTAAAGATGCCTTACACCTGTGAGCAGGAGTTTTATACTCAGAGAAATTATTTTCTTTGTCACTATAATTCATGTAGTGCATCACACAAAAGGAAACCCAGACATGTTTTGCCTCATCTCAATGTTTTGACCTAGAGATGTAATGAAGTTCTAGCTAACAATGTGCAGTACATTTAGGTACAGACTTTTTTTGTATCCGAGGCAGTTCATACCCCATAACTTTTAGAGATCTGCTAGATGTTAGCATGCGGCTAATGTTAAACCTAGATGGCCCGGGGCACTTGTGCTTAAATGAGAGCTGGAAGTTGCTCACCAAGCTTATCTGCACCCATATCTGGAACTATGTTTTGGAAATGTATATTGCCTTTTTTGTTGAGAATAAAACA

Function


GO:

id name namespace
GO:0032024 positive regulation of insulin secretion biological_process

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU300971 lncRNA upstream 117323 5490577 ~ 5490806 (+) True G265198
TU300942 lncRNA upstream 172489 5435399 ~ 5435640 (+) True G265173
TU300908 lncRNA upstream 225205 5382707 ~ 5382924 (+) True G265142
TU300907 lncRNA upstream 225650 5382191 ~ 5382479 (+) True G265141
TU300860 lncRNA upstream 240863 5360934 ~ 5367266 (+) True G265094
TU300925 lncRNA downstream 54248 5668902 ~ 5689574 (+) True G265156
TU300922 lncRNA downstream 75562 5690216 ~ 5712916 (+) True G265153
TU301020 lncRNA downstream 90439 5705093 ~ 5706882 (+) True G265246
TU301026 lncRNA downstream 102966 5717620 ~ 5717948 (+) True G265252
TU301029 lncRNA downstream 105477 5720131 ~ 5720622 (+) True G265253
CI01000063_05563124_05584474.mRNA mRNA upstream 23025 5563124 ~ 5585104 (+) True CI01000063_05563124_05584474
CI01000063_05490285_05556254.mRNA mRNA upstream 51667 5490285 ~ 5556462 (+) True CI01000063_05490285_05556254
CI01000063_05466326_05468126.mRNA mRNA upstream 138847 5466052 ~ 5469282 (+) True CI01000063_05466326_05468126
CI01000063_05400578_05406105.mRNA mRNA upstream 201852 5400578 ~ 5406277 (+) True CI01000063_05400578_05406105
CI01000063_05281800_05302429.mRNA mRNA upstream 305630 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
CI01000063_05639341_05650366.mRNA mRNA downstream 24636 5639290 ~ 5650682 (+) True CI01000063_05639341_05650366
CI01000063_05673923_05678546.mRNA mRNA downstream 59175 5673829 ~ 5678725 (+) True CI01000063_05673923_05678546
CI01000063_05894405_05894580.mRNA mRNA downstream 279751 5894405 ~ 5894677 (+) True CI01000063_05894405_05894580
CI01000063_05922194_05935361.mRNA mRNA downstream 307540 5922194 ~ 5936249 (+) True CI01000063_05922194_05935361
CI01000063_05946534_05948489.mRNA mRNA downstream 331880 5946534 ~ 5948532 (+) True CI01000063_05946534_05948489
TU297890 other upstream 2893612 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 3365164 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4463122 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4897575 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4940747 665800 ~ 667382 (+) True G261984
TU301223 other downstream 299129 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 720624 6335278 ~ 6335601 (+) True G265462

Expression Profile