RNA id: TCONS_00017064


Basic Information

Item Value
RNA id TCONS_00017064
length 1636
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_008537
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25489406 ~ 25499518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGCTGCTGCTCTCGAATAGATGCACTTGTTGAATCAGGTCCCATTGAGCAGAGGGGGACTCAGGTTGCTCGTATCATCTGAAAACATTTGACCGACATCTTCTAAATGAAGGCACACTAAAGAAGCGACCGGGCTACGACGATTTAGAACCTCCCAGCGAGACGCATTTTCAGgacAGGAGTTTTGATGTCTGCTCGGCGATCATCTCTCTGGTCATGTCTGCGTGCTGCTCTGAGCTGCGGGCTTGTCATGCTGACAGCACTGCCAGACTTAACCACAGGCAAGAATTGCTCCCATCCAATCATGCATGAGCATGGAGGTTTTCGTTGTGAGCCGTCACCCTGTCGTGGTTTCCCTCAAAAGAGCTCCATTCGCTTCTTCTGCGAGCCTGGCTACACTTTACCCAAACGCTACCAATCGTCAAAATGTCACCATGGGGTGTGGACACCGAAAGTGCCTGTCTGTATGCCACGACCAGACGGTCATGGTGAACAGCAAGAAAAAATCATCAGCTCTATTCCGAGTGTGGCTACGACTGCTATTGGAGTGTCCATCTTCCTTCTCACCACAACGGCCTGTTTAGTCATCAAATCCCGCCTGTTCTCCTGCCGATCGCATCGGCGTTCCTCGGATCAGCTGGATCTAGTGGTGGATGGTTTACCCGTATCTCTTCCCACATACGAAGAGGCTATCTATGGCAGTTGGGGCCAGCGAATCCCGCCATTTCGTGGTCCCACTCAGCTCCTATTAGCCCAGGACGCTTCAGAACACAGTCCACTAACATCACTGATTCGCTCTGATACAAATCGTTGCAACGACACCGCCAATCAGACCACAGAGACTCCACCTCCTTACGAAGAGGTCCAATCACGATCCAGAGACTCTGTGAATGACAGTGACGGACAGGCCATGCAAAGTGCACTTCCTGCTGATAAAAACAACTAATTATTGGACTTCAGTGAACTCACCCTTAGcctttttgattgtttgtttccTTGCACAGGAGTCCGACTGCGACTTTTTTTTCCGTCTTTGATTATGGATCTCTTTTGGCTTACAACACCAGTGGAAAAACTGCCGCAAATGTTTTGTAATGACCCTAATGGTCAAATCTATTTTGTTTATAGGTGACGTGCTGCAATATTGATTATGTCGTTGTTTTCACGAACAAGGTGGAGACGTGGCTATACCATTTGTCCTCTGTGAGGGGAAATCTAGTGTTTATGAGCACTTTTATGAGTGATGAGtgacttttatttaataatttctgaGAGTTTTAGTGTGGAGCGAATATGATTTCATTGCCTGAAATGtaaaaatcagtgtttctcagAGCATTCGGGTTGATTGAATGTTACTGCTGAACTTTGAAGATTGTGCCTGTTGACTGATGGATTGTAGTATATGATTTTATTCTGTGTCTTTCTGCCTGAAATGAtttcttaaatattgtttaatatatatatatatgatttcagAAAAGACTTGAAGTATGCTTGCTAAACAGACAttgaatgtgtttttgtgtaaCATTTACAATATCTTGTATATAGTTCTGCACAAATAGTATGTTAAataattatacttttttaaactttatgaACAATGTttgctattaaaaatattttaaatc

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-463 Orthologous to human SUSD6 (sushi domain containing 6).

Ensembl:

ensembl_id ENSDART00000162482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018971 lncRNA upstream 89832 25395901 ~ 25399574 (+) True XLOC_008533
TCONS_00018968 lncRNA upstream 111912 25370567 ~ 25377494 (+) False XLOC_008532
TCONS_00018969 lncRNA upstream 111912 25370731 ~ 25377494 (+) False XLOC_008532
TCONS_00018970 lncRNA upstream 111912 25370791 ~ 25377494 (+) True XLOC_008532
TCONS_00018967 lncRNA upstream 279564 25208392 ~ 25209842 (+) True XLOC_008531
TCONS_00017066 lncRNA downstream 28791 25528309 ~ 25529425 (+) True XLOC_008538
TCONS_00018972 lncRNA downstream 69419 25568937 ~ 25570599 (+) True XLOC_008539
TCONS_00018973 lncRNA downstream 396947 25896465 ~ 25902650 (+) False XLOC_008543
TCONS_00018974 lncRNA downstream 1176467 26675985 ~ 26680699 (+) True XLOC_008549
TCONS_00017087 lncRNA downstream 1797158 27296676 ~ 27300833 (+) True XLOC_008552
TCONS_00017062 mRNA upstream 3396 25452092 ~ 25486010 (+) True XLOC_008535
TCONS_00017060 mRNA upstream 40780 25438714 ~ 25448626 (+) False XLOC_008534
TCONS_00017061 mRNA upstream 46381 25439106 ~ 25443025 (+) True XLOC_008534
TCONS_00017057 mRNA upstream 319793 25156121 ~ 25169613 (+) False XLOC_008530
TCONS_00017058 mRNA upstream 319793 25156382 ~ 25169613 (+) False XLOC_008530
TCONS_00017065 mRNA downstream 28772 25528290 ~ 25542592 (+) False XLOC_008538
TCONS_00017067 mRNA downstream 135808 25635326 ~ 25656327 (+) False XLOC_008540
TCONS_00017068 mRNA downstream 135808 25635326 ~ 25656331 (+) False XLOC_008540
TCONS_00017069 mRNA downstream 135809 25635327 ~ 25656327 (+) False XLOC_008540
TCONS_00017072 mRNA downstream 181526 25681044 ~ 25690267 (+) False XLOC_008542
TCONS_00017063 other upstream 19561 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017050 other upstream 527154 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017035 other upstream 806116 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017027 other upstream 920344 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 2038720 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00017070 other downstream 135823 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 168069 25667587 ~ 25667701 (+) True XLOC_008541
TCONS_00017074 other downstream 397928 25897446 ~ 25897539 (+) False XLOC_008543
TCONS_00017075 other downstream 398197 25897715 ~ 25897799 (+) True XLOC_008543
TCONS_00017076 other downstream 606797 26106315 ~ 26106433 (+) True XLOC_008544

Expression Profile

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