RNA id: CI01000063_06271330_06273137.mRNA



Basic Information


Item Value
RNA id CI01000063_06271330_06273137.mRNA
length 1230
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000063_06271330_06273137
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6270763 ~ 6273137 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGAGTTCCTGTTTGGAAGGAGAAAGACTCCGGAGGAGATGCTCAGACAGAATCAGAGAGCGCTAAATAGAGCCATGCGAGATCTTGACAGAGAACGCCAGAGGCTGGAGCAACAGGAAAAGAAAATAATTGCTGACATTAAGAAAATGGCCAAACAAGGACAGATGGATGCTGTGAAAATCATGGCTAAGGACTTGGTCCGCACAAGACGATACGTTAAGAAATTCATCATGATGAGAGCCAATATTCAAGCTGTCAGCCTTAAAATCCAAACCCTCAAATCAAACAACAGCATGGCGCAGGCCATGAAAGGAGTCACCAAAGCTATGGCCACCATGAACAGACAGTTGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAGCGCCAAAGTGAAATCATGGACATGAAGGAGGAGATGATGAATGATGCAATCGATGATGCAATGGGAGATGAAGACGATGAAGAGGAGAGTGATGCTGTGGTTTCTCAAGTTCTGGATGAGCTGGGTCTGACTCTGTCTGATGAACTTTCAAACCTGCCTTCTACTGGAGGGAGCCTTTCGGTTGCAGCTGGGAAGAAAGCTGAACCGCAGCCTACACTGGCAGATGCTGATGCTGACTTGGAGGAGAGGCTGAACAACCTGAGGAGAGACTGAGAAAGACTTTCAATGAAGGTTTTGATTCAGAAATGTTTGCGTAAAGCTCGCTTCACTAAAATGTAGACTGATGCAAAGAGAGAGGATGTGAATGCTGTCTTTTTTTCTGACATTTGACGCTTTAATGCGTCCCTTTTGTTTTTATGTCCTCTTTTTATGACATGTGCTGTATAAATGTTACCAAACACATAACCCAAATGAAGATGCAATGCATCAGACTGCCCTCATGCCTTCTGTTTAGACAAATACTTTTAAAGGTGATAAAATCAACAAAGAATCTGCTTACCCTGGGATTCCAACTTGATCTTTTGAGGAAAACTTAACACTAAGTATTTTACTGCTATAAAATTTGGTTTATCACACATCATCTCTTAATTATAACAAACAGACGGTGATCCTAATCTTTTATATAAATAGTGCGAAATGGAGTCACTCCAGTTTTCAATCTGTTCCTATAAGGGAACATCAGAGAATTCTCTTTGAAATACCTGTGCTATTATACTATCATTATCTTCTATTAATATTTTAATCGTGATCTTATAGTGGTAAATACCTTCATATAATAAA

Function


GO:

id name namespace
GO:0007080 mitotic metaphase plate congression biological_process

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU301912 lncRNA downstream 11072 6259466 ~ 6259691 (-) True G266006
TU301911 lncRNA downstream 11366 6259195 ~ 6259397 (-) True G266005
TU301908 lncRNA downstream 14048 6255577 ~ 6256715 (-) True G266003
TU301907 lncRNA downstream 15540 6255024 ~ 6255223 (-) True G266002
TU301862 lncRNA downstream 35384 6202965 ~ 6235379 (-) True G265960
TU301881 lncRNA upstream 9921 6283058 ~ 6283846 (-) False G265976
TU301890 lncRNA upstream 31346 6304483 ~ 6304949 (-) True G265985
TU301922 lncRNA upstream 46424 6319561 ~ 6319837 (-) True G266016
TU301923 lncRNA upstream 47101 6320238 ~ 6320628 (-) True G266017
TU301924 lncRNA upstream 47762 6320899 ~ 6321186 (-) True G266018
CI01000063_06110909_06118565.mRNA mRNA downstream 150844 6110909 ~ 6119919 (-) True CI01000063_06110909_06118565
CI01000063_06018383_06022776.mRNA mRNA downstream 247276 6018083 ~ 6023487 (-) True CI01000063_06018383_06022776
CI01000063_06011344_06017382.mRNA mRNA downstream 253381 6010663 ~ 6017382 (-) True CI01000063_06011344_06017382
CI01000063_05992697_06005239.mRNA mRNA downstream 265404 5992579 ~ 6005359 (-) True CI01000063_05992697_06005239
CI01000063_05983940_05990611.mRNA mRNA downstream 280152 5983455 ~ 5990611 (-) True CI01000063_05983940_05990611
CI01000063_06291489_06291799.mRNA mRNA upstream 18077 6291214 ~ 6291799 (-) True CI01000063_06291489_06291799
CI01000063_06332215_06332433.mRNA mRNA upstream 59012 6332149 ~ 6332433 (-) True CI01000063_06332215_06332433
CI01000063_06404520_06407506.mRNA mRNA upstream 130687 6403824 ~ 6407676 (-) True CI01000063_06404520_06407506
CI01000063_06652744_06663333.mRNA mRNA upstream 378999 6652136 ~ 6663590 (-) True CI01000063_06652744_06663333
CI01000063_07092189_07106801.mRNA mRNA upstream 818953 7092090 ~ 7107755 (-) True CI01000063_07092189_07106801
TU301675 other downstream 653651 5546701 ~ 5546719 (-) True G265781
TU301422 other downstream 1016823 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301421 other downstream 1016952 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301878 other upstream 15021 6288158 ~ 6290946 (-) True G265976
TU302824 other upstream 1016358 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 1016591 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 1016591 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 1165948 7439085 ~ 7441435 (-) True G266660

Expression Profile