Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017067 |
| length | 1801 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 10 |
| gene id | XLOC_008540 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 25635326 ~ 25656331 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0030688 | preribosome, small subunit precursor | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0034511 | U3 snoRNA binding | molecular_function |
| id | description |
|---|---|
| ko03009 | Ribosome biogenesis |
| id | description |
|---|---|
| ZDB-GENE-030131-3762 | Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human TSR1 (TSR1 ribosome maturation factor). |
| ensembl_id | ENSDART00000135409 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018972 | lncRNA | upstream | 64727 | 25568937 ~ 25570599 (+) | True | XLOC_008539 |
| TCONS_00017066 | lncRNA | upstream | 105901 | 25528309 ~ 25529425 (+) | True | XLOC_008538 |
| TCONS_00018971 | lncRNA | upstream | 235752 | 25395901 ~ 25399574 (+) | True | XLOC_008533 |
| TCONS_00018968 | lncRNA | upstream | 257832 | 25370567 ~ 25377494 (+) | False | XLOC_008532 |
| TCONS_00018969 | lncRNA | upstream | 257832 | 25370731 ~ 25377494 (+) | False | XLOC_008532 |
| TCONS_00018973 | lncRNA | downstream | 240138 | 25896465 ~ 25902650 (+) | False | XLOC_008543 |
| TCONS_00018974 | lncRNA | downstream | 1019658 | 26675985 ~ 26680699 (+) | True | XLOC_008549 |
| TCONS_00017087 | lncRNA | downstream | 1640349 | 27296676 ~ 27300833 (+) | True | XLOC_008552 |
| TCONS_00018778 | lncRNA | downstream | 1675530 | 27331857 ~ 27332639 (+) | True | XLOC_008553 |
| TCONS_00018975 | lncRNA | downstream | 2054003 | 27710330 ~ 27712387 (+) | False | XLOC_008558 |
| TCONS_00017065 | mRNA | upstream | 92734 | 25528290 ~ 25542592 (+) | False | XLOC_008538 |
| TCONS_00017064 | mRNA | upstream | 135808 | 25489406 ~ 25499518 (+) | True | XLOC_008537 |
| TCONS_00017062 | mRNA | upstream | 149316 | 25452092 ~ 25486010 (+) | True | XLOC_008535 |
| TCONS_00017060 | mRNA | upstream | 186700 | 25438714 ~ 25448626 (+) | False | XLOC_008534 |
| TCONS_00017061 | mRNA | upstream | 192301 | 25439106 ~ 25443025 (+) | True | XLOC_008534 |
| TCONS_00017072 | mRNA | downstream | 24717 | 25681044 ~ 25690267 (+) | False | XLOC_008542 |
| TCONS_00017073 | mRNA | downstream | 26742 | 25683069 ~ 25688468 (+) | True | XLOC_008542 |
| TCONS_00017077 | mRNA | downstream | 743211 | 26399538 ~ 26402301 (+) | True | XLOC_008545 |
| TCONS_00017079 | mRNA | downstream | 917349 | 26573676 ~ 26593684 (+) | False | XLOC_008547 |
| TCONS_00017080 | mRNA | downstream | 917423 | 26573750 ~ 26592561 (+) | True | XLOC_008547 |
| TCONS_00017063 | other | upstream | 165481 | 25469729 ~ 25469845 (+) | True | XLOC_008536 |
| TCONS_00017050 | other | upstream | 673074 | 24962136 ~ 24962252 (+) | True | XLOC_008523 |
| TCONS_00017035 | other | upstream | 952036 | 24676913 ~ 24683290 (+) | False | XLOC_008517 |
| TCONS_00017027 | other | upstream | 1066264 | 24563768 ~ 24569062 (+) | False | XLOC_008513 |
| TCONS_00016993 | other | upstream | 2184640 | 23446189 ~ 23450686 (+) | True | XLOC_008495 |
| TCONS_00017071 | other | downstream | 11260 | 25667587 ~ 25667701 (+) | True | XLOC_008541 |
| TCONS_00017074 | other | downstream | 241119 | 25897446 ~ 25897539 (+) | False | XLOC_008543 |
| TCONS_00017075 | other | downstream | 241388 | 25897715 ~ 25897799 (+) | True | XLOC_008543 |
| TCONS_00017076 | other | downstream | 449988 | 26106315 ~ 26106433 (+) | True | XLOC_008544 |
| TCONS_00017078 | other | downstream | 783786 | 26440113 ~ 26440227 (+) | True | XLOC_008546 |
