RNA id: CI01000063_07369762_07372353.mRNA


Basic Information

Item Value
RNA id CI01000063_07369762_07372353.mRNA
length 905
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000063_07369762_07372353
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7369712 ~ 7372353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACATAACAACAGGCAACAACTTTTATTTTGTAATCACGATACAACAAAACTGTCTACGTCAAATCCGGATCAAGATGGCAGCGACCTTGTGTGGCAGGCTTCTCTCGAAAGCGGGATGGCTGCCATTAACCCAAAGTGTTCGACATGGCTCCAAATCTGTCACTCGTCACAGAAAGCCAGTACACATTCTCAAGCAGAAGCTGTTGGCTGTCACAGAGTACATTCCCCCCACACCTGCAGCTCCTCCTGGTGCTCTGGTTCGACGAGTCAGAAAGACTGAAGAGGAAAGTACTCTGGCAGTTCTGTTGAGGAAAGACCTAGAAACCTTGTTTAAGGAGTGTAAGATGATTGCTGTGGTCCAAAACAATGCAATCAATGCAGAGGACCTACTGCAGCTGAAACACAAACTGAAAAGACACAATATCAGTATCAAGTTCTTTCCAAACCAGGTGACGAGGTCTTTCCTCAACAACAGCATTTACAGTAACATGTTGCCTCTATTTGTTGGCCAGACTGTCATATTTGTTAGTAAAGAGCCAAAAGTTAAAGAAATGCTGCAAGCGTTGAGGCGCAGTCCTCAGATGGTGCTGTTAGGTGCTTGTATAGAGAACACGTTGCTCTCGTATCAAGGCGTTCTCAATTATTCCAAACTCCCGTCTATGACCACTATCCAGGGTGAGCTAGTTGGTGGTCTAACCATGATGACCTCACAGACAGTCTCGATGCTACGACACCATCCAGCTCATCTTTCTGCCCTCCTTCAACAGTATGTCAAACAGCAGGGCTCTGGGGACGCCACAAATGCTGTTACAAATAAAGATGCTTCTACAATACAGGAAGCAGCTGCTTGAATTTTACAAATAGACATGGATGAACAGATTGACCACATGCATATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302846 lncRNA downstream 17448 7351818 ~ 7352264 (-) True G266817
TU302847 lncRNA downstream 18075 7351337 ~ 7351637 (-) True G266818
TU302837 lncRNA downstream 37098 7332339 ~ 7332614 (-) True G266808
TU302821 lncRNA downstream 87454 7281932 ~ 7282258 (-) True G266795
TU302697 lncRNA downstream 93147 7266521 ~ 7276565 (-) True G266677
TU302680 lncRNA upstream 2418 7381082 ~ 7381335 (-) True G266661
TU302689 lncRNA upstream 64444 7436797 ~ 7438252 (-) True G266669
TU302705 lncRNA upstream 92116 7464469 ~ 7467147 (-) True G266685
TU302856 lncRNA upstream 108281 7480634 ~ 7480877 (-) True G266827
TU302660 lncRNA upstream 139583 7511936 ~ 7515695 (-) True G266647
CI01000063_07356051_07365604.mRNA mRNA downstream 4108 7356002 ~ 7365604 (-) True CI01000063_07356051_07365604
CI01000063_07217465_07224133.mRNA mRNA downstream 145390 7216986 ~ 7224322 (-) True CI01000063_07217465_07224133
CI01000063_07205887_07209986.mRNA mRNA downstream 159041 7205855 ~ 7210671 (-) False CI01000063_07205887_07209986
CI01000063_07147043_07192035.mRNA mRNA downstream 177677 7146006 ~ 7192035 (-) True CI01000063_07147043_07192035
CI01000063_07114269_07117313.mRNA mRNA downstream 251914 7113407 ~ 7117798 (-) True CI01000063_07114269_07117313
CI01000063_07377062_07377408.mRNA mRNA upstream 3980 7376333 ~ 7377408 (-) False CI01000063_07377062_07377408
CI01000063_07394616_07396752.mRNA mRNA upstream 22263 7394616 ~ 7399019 (-) True CI01000063_07394616_07396752
CI01000063_07411237_07413430.mRNA mRNA upstream 37822 7410175 ~ 7413430 (-) True CI01000063_07411237_07413430
CI01000063_07424567_07426570.mRNA mRNA upstream 52008 7424361 ~ 7426570 (-) True CI01000063_07424567_07426570
CI01000063_07450175_07455382.mRNA mRNA upstream 76809 7449162 ~ 7455585 (-) True CI01000063_07450175_07455382
TU302826 other downstream 79488 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 79699 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 79699 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1078766 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 1752600 5546701 ~ 5546719 (-) True G265781
TU302679 other upstream 66732 7439085 ~ 7441435 (-) True G266660

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010343 False 843 mRNA 0.44 5 NC_007123.7 28796622 ~ 28799642 (-)