RNA id: CI01000063_07450175_07455382.mRNA


Basic Information

Item Value
RNA id CI01000063_07450175_07455382.mRNA
length 5872
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000063_07450175_07455382
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7449162 ~ 7455585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGCCTGCACTTGTATCATCCTCCCAAGGACATTTTTCCAATGGAATGGAACAGAATGTATTCTCAGCCAATTGTTTGAATGTTGCCTTCACGTTCAGGCCTCACCTAACAAGTCATTTTGATAATAGTGAGGACAGGTGTGTCCCTCACACTCATTCAAACTGGCTCTTATTGACATTTCTTATCATTATACTATAACATTATGGCTATGCAAGAGCCAGGTCGGACCAAAGGCTTTTCGTGTAAACATTGTGGTGTAGTATGTGCAAGCATGCCCAGTCTTTTGGAGCATACAGACACTTTTCATCAGTCAGAAGAGGAACGCAAGTTCAAATGTGAGGAATGTGGACGAGGCTACAGACATGCTGGCAGCTTGGCTAACCACAGAAAAACACACGAGGTTGGCTCTTTTCAGTGTCATATATGCTCCAGGAAGCTCTCCAATGCATTGGCTCTCAAAAGCCACCTGCGCATCCACACATCTAGAAAGAAATATTCTTGCACAGAATGCGGAAAGGCTTTTCGTCTGGCAACTCAGCTGGTCACCCATCAAAAGGTCCATCGCAATAAAGAGTCTCGAGTCAGGACAAACAATGTTGCAAAAAGTCACATTGAAAGTGGTTATAAAGATGATGAGTTGCTGCAACTAGATGATGTGGATTTTGACATTATGCCAGATTTGCAGCCAGACATGAAGCTGAATATTGCTCCAGTGAGCAGCCTTTGTAATGGTGCAGTGTCCGAACACATTTCAAACTCCACCCCAGAAAGTGACACGGCAGCTGAAGATGATGCTGGAGACAGGCCGTTTAAATGTGACTTATGTGATAAGACATACAGACATCATGGCAGCCTCATAAATCATAAGAAAACTCACCAAATGGGATTATTTGAGTGTCCAGTCTGTTTTAAACAGTTCAACAATCTTGCTGCCCTTATTAGTCACCAGCGAATCCATAGTAAAACCCGAGGTCGTCTCAGTGCACAGAACTCTAAAGCTGCCCTCACAGACTGCAAGCAAGAACTTGCCTCTCATGTTATGCCACAGAATGGTGATACTAATATACATTTTTGTCACCTTTGTCAGGTTACTTTTGCTAATGATGATGAGTTTCAAAATCATATTCTGTTGCACAACTCCTCTTCTGTGTCATTTGAGCTCCCTACCAATTTGTCAGAGGAGCACAATTTCTCGTACAATGATAGTGTTAATCATTCCCCAGAGACTAATCCTTATCCCCCCAATAGTGACACTCCACCGTTGCCTCCGTTACTCAATAAAGTTGATTATGACCAATCAGATGGGCCAATGGAAAATGGTCATATGTATCTACCCAACTCTTTAGATCATAATTCATTGACTCTACATGCTCAGGGACAGCCAATTGCCCTACCATCAGAGAACCTCAACCCTGATTGTTCAGCACAAGGTCTTGATAACATCAAAGTAGAAGATGCCGACAGTTCTGATCGCCGCTTCAGGTGCCACATCTGTGGCAAAAGTTACAGGCATGCAGGCAGTCTTATAAATCACAAACGATCGCATCAAACCGGGATCTTTCAGTGTTCCATCTGCCGCAAGAGCTACCCTCATTTGGCAGCTCTGCGGAGCCACCTTCGGATTCATAAGGGAAGACCCACATCTTTGCTTGCTAGTTCCGAGGGTGACTGGCTTTCCTCAGAGCCCTTAACACATGAGAACCAACAGGGCTGCTTTCCATCACATGAGGGAGATGTAAGTGGAATATTAGGCCTTCCTCAGGACCTGGTAGATTCTGTGCAGCATGAATCTGATGAGGAGTATGTGAATGAGACAAATGCTACTGAATTTCATGAGCAGTTTGACAATTCCTTCCCAGATGAGCACCTACCTCAGGACGAACACCTCATGGAGAGGCACATGTGTGCAGACTGTGGTAAGACATTTACTGATATCGCAGGAATCAAGTCACACATGTGTCCTCTCCTGAATCAGCAGTATCAGACCATGACGAATGACTCATCCGGTCACATGGACTTTCACAACACGAAGCATCAACATTTCTTAGGACAGTCAGGTGAGGATATTGGTTTTGAGGGACACAATGGCAGTGCAGCTGAGTCTTATTTTAGACAGCAGACCTTTCATGACAACATTCATAATCAGATGAGTGACAGCGAAGATCATGAAGATGGTGAAGAAGAGGATGATGGAGAGATGTATCACTGCTCAGTTTGTGGGAATCACTATACTAGCATGCGTGCACTGCGAAGCCATCTCCGAGGCCACACTCAAACTCATGGTGCACCTTCAGCATCTGGTCCATCATCTGTGTCACCTCTGGAGGTCAAGAGAGATGAACAGAGTGAAAATCAGCAGAGTGAATGCAGCCTGATTATCTGCAGTACTTGTGGAGAGAGCTTTACAAAGAAACAGGACCTACAAGCCCACCAGCTCTTGCATAGCAATATAGAAGGTAATCCGCCAGAACAGTTTGTCACAGACCACCAGAATGAGCTCAAACCAAAAGTGGAAATGGAAGATATTATTTGTGGGAAATGCGGCATAAGCTGTAGCGATCTTTATCACCTCAATAACCACAACTGCACGGGACAACGAGATGGACAAGTGGAGGAAAAATGTGTGGAGAAACCGCTTCTTAGAAATACATTTCAACAAGAAGTTTTACAGGAGAGTCCACATGATGGAGAACGACAGTACAAGTGTGACCAATGCGGTCGTTCGTACAGGCATGCTGGATCATTGCTCAATCATAAGAAGTCTCACAAAACTGGAGTGTTTCGCTGCTTTGTTTGCCAAAAGCGTTTCTATAATTTGTTGGCCCTCAAGAATCACCAGAGGACACACTTCGATGTTAAAAAGCATAGTTGCACAGAATGTGGGAAAGCATTCAAAATCTATAAACAACTATTGAACCACCAGAGGGTACATCAGGAAAACAAGGCTAAGATTGAAGAGCTCAACAAACAAATTCAGACACTCATGCAGATGAGTGGAAATGCCTCAGGGAGTGGAATGCAGGCACTTAATTTCAGCAGAAGGAGAATGAGCAGACGCCATAAGCAACGGCAGACCTCTAACGGTGATCAGTCTAGCCAAGAAAAGGAGGGCCAGATGGGAGATCCCAGGGACCCTCGGCCTTTTGTCTGTGATCAATGTGGGCGAAGCTATCGGCATGCAGGAAGCTTGGTCAACCACAAAAACTCGCACAAGACAGGTGAATATTACTGTGCTTTGTGCAACAACACTTATTCCAACCAGCTAGCAATGAAGAACCATTTACGAATACACTTTTCCGTCAAAAGATACCGTTGCCAAGAATGTGGAAAGGCCTTCAGAGGAAACAAACAGTTACTCAACCACACTTGTTCGACCACTAAAAGAAAAGCAGCAGCAAGAGGAAAGGTCAGGGGCCACAAACAAGAAAAGGATTTAAAATGCAAGCATTGCCGTCTTGTATTTCCAGATAAGGAACTGCTTGACGGACACACCTGTTGCAAAGAGACTGTCCCTGATTCTGTCCCCCCAGGAAATGTAGACGGTGACACTGACAGTACAGCCCTAGAAAAAGAGGAACGACCATTCAAGTGTAACATTTGCAGTCGAAGTTACCGTCACGCCGGTAGCTTGTTGAACCATAAGAACACACACAAAACAGGCCATTTCACCTGCTCCTTCTGTGCCAAGCCCTTTTCCAATCCCATGGCTTTACGAAACCACACACGCATTCACACGCAGAAGAAAAAGTATGTCTGTCCTACTTGTGGTAAAGCTTTCCGTCTCTCCAGTATCCTGTACAACCATCAAAAAATCCATGCACGTGGAATAACTCATTACAGCTGCCAAACGTGTGGCAAACGCTTCCAGGGAAAGTCTGGGCTAAAGAGACATCGCTGTTACCGAAACGGAAATCCGAACTCTACTGTAAATCAAGATGGTGTGGACAAATGCTATACATGTGATCAATGCGGACGCTCTTATAGACACGCCGGTTCCCTTCTCAACCACAAGAAGACTCATTCTGCTGACCTCCTGCACTGCACTCTCTGCCTCAAAACATTCACAGATCCTCTGGATTTAGAGAGCCACTCTCAAATGGCTCGCCACTGCTGCCCAGATTGCGGGAAAACCTTCTGTGAGTTTTCACACATGCAGAGCCACATGGAGGTGCATAGTAAGGGACTCCCCTATTACTGCAACATGTGTCAACAGAACTTCCCAAACCTGGCTAGTTTTCAGCAGCACCAGGAACTCCATGGCAGCTTACAAGGGCAGTCACACCATGAGGAAGGTATGCAGATGCAGCAGGATTTAGACTGGGACTCAACACTGGACCAGCAGATAGGAATTCAGAGCCTTCCTAAGATCGATTCAGCTTTCAGCCAAGTGCACGGATTCCCTGAGCCGCAAGACCAGCAGGAAAGTAGCGAGGAATACGGTAGGGAGGAGAAGAGTCATGTGTGTGAGCATTGTGGGCGCACTTACCGCCACGCTGGTTCACTGCTCAACCATAAGAACAGCCACAAGACCGGCTCCTTCTTCTGCTCGGTCTGCCAAAAGGAGTTCTCCAATCTCATGGCACTGAAGAATCACCGACGCATTCACACAGAACCCAAACGTTATCAGTGCCTAGAGTGTGGCAAGGCCTTCCGGGTCTCCACCCAGCTTATCTGCCACAGGCGCATCCACACCAAAGAGAAGCCCTTCTCTTGCCTCCTTTGCGACAAGCGTTTCTCTAGCAAGTCCAACCTCCGGCATCATCAGAAGATGCATCAGAATACCCAACAGACCTACGAGACCTCCTTCAGTATGGATGATAACGCATTAATGGGACTGGGTGTGGACCCTTTCCTCTGAGGTCAGACTTCAGTCTTGCCACTCCAAGGGAAGATTTCAAAACAATATTCTATTACAAGAGAAAGACTCTCTCTCCACCCAAGGCCTAATGCCAATAATCGTACAACATCAGGTTTTCTGCTGTGCTTGTCCAGATGGTGTCGCACACAGATGCTAATCTCGGCAAGGCTTGCCTCCTTTACTGTTGTTTTTAAATATTGTTCTTTAAAGGACACTTAAGACTGGCATTGATAAGATACTACCTCTGGTAGGGACAGTAATACTGTAGACATTTTAGAATAAGTGACAGTGCCTGTCAGAGACCATTTTAGATGTTTATTTTATTTCATTTGTTTTGTGTTCCCACACAGTGCACAAATTGTATGGTACTATGATAGATCTCAGACTGAGAGCTTGGATGAGTATTTCTGTCCAACCTCTTACCCAGTGCTGCCTTCAAGAGTCCGACCGATTATTTGGCGTAATCGGAGGGGGAACAGAATAAGGTGTTCTGGATAAAAGGATACATGCTATCCTTCTCGTTATGTTTGTATTAAGTGCTTCCGTTTTTCAGGTTATCGTACTGCTCACGGTAGATGTGCTGTTATCATTTCATCGTCTCATTAAGGCCAATGTACACATGATGTTCCTGCAGTTTCATAATGATGACACTGGTAAAGCTGTTCAACGGCAAACTACCCTAAGGCCTGTCCTGTAGAAAATATCAAAGATATTTATTTATTTAAAAGTCACTATTTATACCTTAAGCATACTACTTGTCTTTATTACTGTTAAATGTGGTACACTTTATGCATGGTATTAAATGTGTGATAAATGCTAGATTGGTTGAGTACATAGGTATTTTAGATAATGGTTGTAAACACTTAAGAAATACCTCTTTAAAAGCATTCACAACAGTGTATTTAAAAGAACTGAAATATTTCAGTTTTCTTAGTGCATACTTTTCTAGTAAATGTTTTATGAAGTTGAAGTATATTCTTCACAAGATATTGGAGCACAAAAAATTTAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302689 lncRNA downstream 10910 7436797 ~ 7438252 (-) True G266669
TU302680 lncRNA downstream 67827 7381082 ~ 7381335 (-) True G266661
TU302846 lncRNA downstream 96898 7351818 ~ 7352264 (-) True G266817
TU302847 lncRNA downstream 97525 7351337 ~ 7351637 (-) True G266818
TU302837 lncRNA downstream 116548 7332339 ~ 7332614 (-) True G266808
TU302705 lncRNA upstream 8884 7464469 ~ 7467147 (-) True G266685
TU302856 lncRNA upstream 25049 7480634 ~ 7480877 (-) True G266827
TU302660 lncRNA upstream 56351 7511936 ~ 7515695 (-) True G266647
TU302862 lncRNA upstream 67133 7522718 ~ 7522990 (-) True G266833
TU302690 lncRNA upstream 136869 7592454 ~ 7592720 (-) True G266670
CI01000063_07424567_07426570.mRNA mRNA downstream 22592 7424361 ~ 7426570 (-) True CI01000063_07424567_07426570
CI01000063_07411237_07413430.mRNA mRNA downstream 35732 7410175 ~ 7413430 (-) True CI01000063_07411237_07413430
CI01000063_07394616_07396752.mRNA mRNA downstream 50143 7394616 ~ 7399019 (-) True CI01000063_07394616_07396752
CI01000063_07377062_07377408.mRNA mRNA downstream 71754 7376333 ~ 7377408 (-) False CI01000063_07377062_07377408
CI01000063_07369762_07372353.mRNA mRNA downstream 76809 7369712 ~ 7372353 (-) True CI01000063_07369762_07372353
CI01000063_07458562_07458738.mRNA mRNA upstream 2230 7457815 ~ 7458854 (-) True CI01000063_07458562_07458738
CI01000063_07483274_07486490.mRNA mRNA upstream 27517 7483102 ~ 7487618 (-) True CI01000063_07483274_07486490
CI01000063_07493274_07509323.mRNA mRNA upstream 37427 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07516671_07521503.mRNA mRNA upstream 60861 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
CI01000063_07525686_07551770.mRNA mRNA upstream 70101 7525686 ~ 7551770 (-) True CI01000063_07525686_07551770
TU302679 other downstream 7727 7439085 ~ 7441435 (-) True G266660
TU302826 other downstream 158938 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 159149 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 159149 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1158216 6288158 ~ 6290946 (-) True G265976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010357 False 7103 mRNA 0.43 5 NC_007123.7 28946708 ~ 28956921 (-)