RNA id: CI01000063_07483274_07486490.mRNA


Basic Information

Item Value
RNA id CI01000063_07483274_07486490.mRNA
length 2218
RNA type mRNA
GC content 0.35
exon number 5
gene id CI01000063_07483274_07486490
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7483102 ~ 7487618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCGTCTGCTAACCAGAGGTGGTTTTACACTGAACGTTGGATATGAATTCTTTTCTTGTCTCTGTTACCTGTCTACTTTTTCTAATAGGTGAGAAAAGCTTCCATTCTTTTTTAGTGCACAGGCAGACGATGGTCATTTGTTCTAAATATAAGCACCTTGTTTGCAATGGCTAAATTGTATAGTTATAGGGCATCTACTTCAGTTATTTACATCTAAAACAGTTTTTTAATATTACTGGCTTGCAGATGGAGCGTTCCTTAAACGAGTATGCAGTAAGCAAGATGTATTGGAATATTTGAATCTTACCAAAGGCAATGAGAAATTCACAACTTGCCGTCCTGCACTGGACTGGACACACCCCACCATAGTGTATTTTGATATTTACCTCTATGGCATTCTTTCTATGGTATGACTACAAACAACCTATGTTCCAGTAGACCATTGTTCTGTGAAAACTGCTAAGATTTTTTTTATTGTTATTATTATTTATTATTATATTCATTCATTTATTTTTTGCAGATTGAAAAATCTCAAATCTTTGTACCTTTATTATGGATATCTGCGGTAAGTGTCAAAATTTGCAAATCTTCTAATTCCTAGATTATATTGCATAATTCAAAAAAAGAAATATAAATACTGGTTAAAGTAATTTATCCGTTTAAAGGATATTTATTTATTTATGTATTTATTTATTTTTGCTCACTTAGCGCTGGAACAACGAACGAATCTCTTGGGATCCTAAGGATTTCTGTGGCATTAAAAATGTGATTTTGCCAAAAGAACTGCTTTGGAAGCCAGACCTCTTTGTTACTGAGGCGTGAGTATATACAAATGATAAATCTGTATATTTTTTCTTAATTTATATAATACACACATTATACTTTATACATTATTATTGATGATTTTAAAAAAAACAAACACCTTGTTTATTAACTGTATAACATTGAGAGGAATTATTTATGTTGGAAATTCTAAAATGTATGATGTAAACTGGTATATTTGTTTTGACACAAACTCATTTTACCTGCCATGTTAAAAATGTAATTTATCAACATTTTTCAGTGTAGAGAAGGAAGATGGACCACTGAACCCATATTTGTATATTACTCATGATGGAAATGTGACAATGGAGGATGACCATAAAATTGTCAGTACCTGCACAATGAATGTACACAGATTTCCTTTTGATACCCAGACCTGCCACATAACAGTGTCTTCAATTAATCACTCAGATAAAGAAATAAAGCTGGTTCCTGCCTCCAATTCATCAAAGGCGACACAAGTAGCTCGGGAAAGCATATTAACCCAAGGAGAATGGGAATTCTTGAACATATCTGTCTCAAAGGAGAAAGATAATTATGACGGCCAAACATTTGACAGGATAAAGTACACGATTTCAGTCAGAAGGATGCCCCTGATGCATTTCATCAATTTTCAGCTACCTATATTGTTCTTCCTCATTGTGGACTTAGCTTCTTTTTTCATACCAGATAAAGGGGAGAAACTGTGCTTCAAAGTGACTGTGCTGCTGGGGATCTCTGTACTTATGCTCATCCTAAATGACATTCTGCCTTCCAAATCTCACAGATGTCCTCTGATTGCTACGTATGTCATTGTCATCTTTTCCTTCATGTTGTTGAGTCTTCTGGAGACGATTTTGGTGATATACTTAATAAATATGAGCTCTGAACAAGACACTAAGAGGGTTCAGAGACCTGAAGATCTCAATTCTGAAACAGATAAATGCAAAGGAGACAGCAGTGATCGCATGTGTTATTCTGGAATGGAGTCTCCTCTAGAGTCTCTGATGTTGAAGGAAATACACAGCAAAGAAAAAATTAATGACATGCACTTATTGCAGCTGATCCTGGAAGAGCTTCAGACTATCAAACAGACTCTTGTTCCCCATACTTTAAATGCCCAAACTGGTCAGAAGTACTGGTTAGGAATGGTCAAATGCATTAACAGGCTTTTCTTTGTGGTTTATCTCATCTCTATTTCTCTCTTTCTTGGTTTCATGTTTCGAGAATGGAAAGTTGACTAATTTCAGACTCTAAAATGGTGCATATAGTATTATATACATTTTGTCTTCCTGTTAAAAGTACTGTTATTCTTGAAAGAGCTGCAGCATATACTTCAAATTATCTTGTGGTACTTTTATTTCCCGTACCTTGCAATATGCCCGGCTTTGTATACTGTTTATTATGTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302856 lncRNA downstream 2225 7480634 ~ 7480877 (-) True G266827
TU302705 lncRNA downstream 15955 7464469 ~ 7467147 (-) True G266685
TU302689 lncRNA downstream 44850 7436797 ~ 7438252 (-) True G266669
TU302680 lncRNA downstream 101767 7381082 ~ 7381335 (-) True G266661
TU302846 lncRNA downstream 130838 7351818 ~ 7352264 (-) True G266817
TU302660 lncRNA upstream 24318 7511936 ~ 7515695 (-) True G266647
TU302862 lncRNA upstream 35100 7522718 ~ 7522990 (-) True G266833
TU302690 lncRNA upstream 104836 7592454 ~ 7592720 (-) True G266670
TU302878 lncRNA upstream 201234 7688852 ~ 7689102 (-) True G266846
CI01000063_07458562_07458738.mRNA mRNA downstream 24248 7457815 ~ 7458854 (-) True CI01000063_07458562_07458738
CI01000063_07450175_07455382.mRNA mRNA downstream 27517 7449162 ~ 7455585 (-) True CI01000063_07450175_07455382
CI01000063_07424567_07426570.mRNA mRNA downstream 56532 7424361 ~ 7426570 (-) True CI01000063_07424567_07426570
CI01000063_07411237_07413430.mRNA mRNA downstream 69672 7410175 ~ 7413430 (-) True CI01000063_07411237_07413430
CI01000063_07394616_07396752.mRNA mRNA downstream 84083 7394616 ~ 7399019 (-) True CI01000063_07394616_07396752
CI01000063_07493274_07509323.mRNA mRNA upstream 5394 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07516671_07521503.mRNA mRNA upstream 28828 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
CI01000063_07525686_07551770.mRNA mRNA upstream 38068 7525686 ~ 7551770 (-) True CI01000063_07525686_07551770
CI01000063_07578043_07590189.mRNA mRNA upstream 90358 7577976 ~ 7590691 (-) True CI01000063_07578043_07590189
CI01000063_07605652_07611233.mRNA mRNA upstream 117995 7605613 ~ 7611233 (-) True CI01000063_07605652_07611233
TU302679 other downstream 41667 7439085 ~ 7441435 (-) True G266660
TU302826 other downstream 192878 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 193089 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 193089 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1192156 6288158 ~ 6290946 (-) True G265976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009548 True 682 mRNA 0.41 5 NC_007123.7 31773435 ~ 31779178 (+)