RNA id: CI01000063_07525686_07551770.mRNA



Basic Information


Item Value
RNA id CI01000063_07525686_07551770.mRNA
length 4191
RNA type mRNA
GC content 0.50
exon number 14
gene id CI01000063_07525686_07551770
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7525686 ~ 7551770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATACGGTATCGCGCTTTATGAATTCCGGGCCCTTGAGCCAGGTGAGCTGGACTTTGATGTCGGTGATAGGATTCGAATCCTTGCTACGCTGGAGGACGGGTGGTTGGAGGGGCAAATACGTGGCAGAAGAGGAGTTTTTCCCCATCGATTTGTCAAGATGGAAGGGCAGCTGCAAATCGTCCCACAAACTGAGACTTTAACAAGTGAAATTAGTGTACCTGAGAAAGAAGAAGAACATTACACTCCCGATTATACCTCAGTTCAACAAGATCGCTCGGTTCCAGAATATGAGCAAGAGTGGACTACCCAGGAAGACCACACGGTGTGGGACCTGGATTACTTTGAGCGCCGGGAGGAGGAAAGAAAGGATGACCATGTGCGCTACATGCACTCCGATCAAAGTTCTCAAGAGAAAGGAACGACTGCAAGTCAATCACAGGTTCAGTCACAAGAAAGAAGGCGAGAAAGACCACCACCCCCTCACACGCAACCCCGCAGAGCAAGTAGCTCAGCCCACAGTGGAGTTCGAAGGACCAGAATGGGCAGCCCCAATCTGGGTAGACCCCAGCTGCCCCCCAGGCCAAGCCTTCATGCTCTCAGCAACCGGCAAAACAGCAACGGTTCTCACACCAGCTTACGAGAACCTCCCCCAGCACCCATCACGAGGAACCAGAGTCTTAATCTTCCCGCCAGAACCTCACCTAGTTCCACCTGGACAAGAAACAATGGTAGCTATGCCTCTCATGACAGCAGAAACCCCTTCAGCAGTAAAACTTCTGGTGAAAAGAACAGGCAGAAAAAGCTAACTCGACACGCAAGCGTCAATGATTCGGACCTAATATCCGGTGGCCGCAGCGACCACAGGGCATGGTCTCAAGGACAGGGTTCAAATGGGTTACCGACATCTCAGACAATGGGAATTTTGGCTGTGTCAGCTGGGGATCTTGAAGCCAAGCTTTCTGAGCAACTGATAGAATTCGAAAGGAGCTTGCCGGGTCGTGGCAATGGAGCCACGGAACAGAGCCGATGGGAGGAGGTTAGTGGAGGATGGGGCAACAAAGTTTCCCGTCACTTCTCCATTGTGGACTACAGCGATGAGAATGACATAATCCGTGGCTCCTCCCAGTCTTCGATGGAACGTCTGTTACCCACCACTTCCTCTCCCTCTGGTTCTGCCTCCTCCTCTTTGGAAAGACGGAAAACGCTACGCCCACCTCCTCCTCGACCTCGGGTCCTTAGGCCACCAGCACCTACAAACACGCATTGTCCTCAGACGAATGGTCGTATTGCTCCTCAGCCATACAGACCCGCACGTCCAGCGCCACGGCCACCTCCTCCGTGCCCACGCACCAACCCTCGCCCCCCTCCACCAGCTTCCAATCCATTCTATAACTCGCCAGAAGAGGAAGAGACTGTTGAAGAGGAGCAATACAGGTTGCTCCTGAGGTTGGAGGAGGTGGAAAGAGACATTGATATGTATTCTCACACAGCCCAGGAGCTGCAGGCCATGCTGGAAGAAGAGCAGGATGAGACTTCGAGACAACAGGCTCTGGAGAATCTGGAATTCTGCACCTACACCATGGAGACACTAACCCTGGAACAGCAGCAGCTGCAAGAGATGACCCTGCTTGCCTCCCAGCCACAGTCTCTGGAATCATCCCCGGCATCAGCAGCCACCGCTGAAGACCCTGAACAAAGGATGCTGGAGAAAAGATTAAAGGTCATCGAGGAGCTTCTGCAGACAGAACATGACTACATCAAGGATCTTCAGATGTGTGTGAAGGAAATCATTCTGCCTTTGCAGAAGAAACAGGTCCAGAATATTGACTTTGATGGTCTCTTTGGAAACATCAACTCTGTTATTGACCTTTCCCGTCGACTTTACAAGACCCTCCAGGACACTGACTCAATAGGTCAAGTGTTCCTGGACTACAAAGGTGAGTTGGAGGAGGTTTACAAGATCTATTGCCAAAATCATGATGACGCCATCTCTTTACTGGAGACCTATGAGAAGGATGAGAACATCCAGAAGCACGTGTTGGAATGTCTAGAGAAGCTCAGGGGAAAGACAAACTACATTAATCTGGGTTCCTTCTTGATAAAGCCAGTTCAGAGAGTGATGCGGTACCCCCTGCTCCTGATGGAACTGCTCAACACCACTTCTGAGTCGCACCACGACAGGAAGCAGCTTGCCGAGGCTGTGGTGTCAATCAAAGAGATCAACGTCAATATCAATGAATACAAAAGGAGAAAGGATCTTGTGGTGAAGTACCGCAAAGGCGATGAAGACAGGCTCATTGACAAGATCTCAAAGCTGAGTATGCACTCCATCATCAAGAAGTCAAACAGAGTGAGCAGCCATTTAAAGCACCTGACTGGGTTCTCACCTCAGATCAAAGATGAAGCTTTTGATGAAGCAGAGAAAAGATTCAGACTGCAGGAGAGACTCATCAAATCCTTCATCAGGAACATCTCCCTCTATCTGCAGCATATAAGGGAGTCAGCCTCAGTAAAGGTGCTGGCAGCCATCAGTTTCTGTGACATCTACACAGAGCGGCAACAGCAAATGGATCCTGAACGTTTCCAAAGAGCGCATCGATGCATCAGCGACAAACAGTTCACAGAGTTTAAGGAGAGGACAGAAGACCTAGTCATCACTCCCCTCAACCAGCTGCTCAGTATGTTCGCCGGTCCCCACAAACTGATCCAGAAACGTAGAGACAAGCTGCTGGACTACGACAACTGTAAGGAGCGTGCAGAGAGGCTGAAGGACAAGCGCGTGCAGGAGGAGCTGCAGGCGGCGAGGAATAACTATGAAGCACTGAACGCCCAGCTGCTGGATGAGCTGCCCAAGTTTCACAGCGCGGCCGAAGATCTGTTCACCAGCTGTGTGAGGAGCTTCGCCCAAGCCCAGAGAGATTTCGTTTCACTCACGCTGGGAGAACTCACACCACTACTGAAGCTATCTGGTTTGGGTGGCACAGAAGGAAATCTGGTGTCCTTGTTCCAAGAAGAGCACACACGAGTGTTGGATTTACTTCAGAGCTTCAGTTTCTTTCCCGATAATCTTCCCACTACTGTACGCAAGCCTTTTGAGAAGAAGACTCTGGAGAAGCAGAACACCAAGAAGCAACAAGGCCCTCCAAACTATGTACTACAGACGGATGAGCACCGAGCGGGGCTTCTGGCAAGATACGGGCCAGAGAAACTCTTCCAGGCTGAAAGAAATTTTAATGCAGCACAGGACCTGGATGTGTCTGTACTGGAGGGAGACATAGTGGGTGTCATCAAGCAGCAAGACCCCATGGGCAGCCAGAACCGCTGGCTAATAGACAATGGAGTTACGAAGGGCTTTGTATACAGCTCCTTCTTAAAGCCCTACAATCCACGCAGGAGTCAGTCGGATGTTTCCATTGAGAGCCAATCATCAAACGAGTCTGGCTACGGTGGCTCTTCTCCCATGTTCTCACGGCAGAATAGTAACAGCACTCTGACTTTCAACCAGGATACATCGACCGTCAGCTTCTCAACTGTGACGGCGACAGCTCCATCCCAATCTCACACTCGCCCTAATCAGGAGACCACCCTAAGGAAAAACAGAGAGGCTTCCTCAACCAACTACTCCTCCGCCAATCAGAGGGATTCCCTTGACCCCACCTACAGAAACTCGCCCAATCTCAAAGAACTGTCAGAGACAGCCAGTCGAAATAACAGGGAACTCCCAGAGCCTTCCTACCGAAAACCCACCAATCACAGAGACACTTTAGACTCTGATCAAAACACTCCAACCAATCACAGAGATCTCCCAGACTTCTCTGAGACAGATTCTTGTTCCTCCATTAATAATTCTAAAAACTCCAGATATGAATCATCTTCAAGGTATCACGACTCGCGCAGCTCACAGCAAAAACAAAATGGAGACTATTCGGAACAGCAGAGAAGAACACAGCACCCTCCTGAGGAGTATGTAGATCCAGAGCCTGAGCCTGAGATTGATGGACACCAGATATATTACGCTCTTTACTCCTTCAGTGCACGGTGTGCAAATGAGCTCAGCATTTCAGCCAATCAGCGGGTCCGAATCCTTGAGTTCCAGGACATGAATGGCAACCAGGAGTGGTGGCTGGGGGAGGCAGGAGGACGGAGGGGTTACGTCCCATCCAACTACATCCGCAAATCTGAGTACACA

Function


GO:      GO:0005089, GO:0005737, GO:0042384, GO:0005085, GO:0001822, GO:0035023, GO:0035556

KEGG:

id description
K20705 DNMBP, ARHGEF36, TUBA; dynamin-binding protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302862 lncRNA downstream 2696 7522718 ~ 7522990 (-) True G266833
TU302660 lncRNA downstream 9991 7511936 ~ 7515695 (-) True G266647
TU302856 lncRNA downstream 44809 7480634 ~ 7480877 (-) True G266827
TU302705 lncRNA downstream 58539 7464469 ~ 7467147 (-) True G266685
TU302689 lncRNA downstream 87434 7436797 ~ 7438252 (-) True G266669
TU302690 lncRNA upstream 40684 7592454 ~ 7592720 (-) True G266670
TU302878 lncRNA upstream 137082 7688852 ~ 7689102 (-) True G266846
CI01000063_07516671_07521503.mRNA mRNA downstream 3825 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
CI01000063_07493274_07509323.mRNA mRNA downstream 16363 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07483274_07486490.mRNA mRNA downstream 38068 7483102 ~ 7487618 (-) True CI01000063_07483274_07486490
CI01000063_07458562_07458738.mRNA mRNA downstream 66832 7457815 ~ 7458854 (-) True CI01000063_07458562_07458738
CI01000063_07450175_07455382.mRNA mRNA downstream 70101 7449162 ~ 7455585 (-) True CI01000063_07450175_07455382
CI01000063_07578043_07590189.mRNA mRNA upstream 26206 7577976 ~ 7590691 (-) True CI01000063_07578043_07590189
CI01000063_07605652_07611233.mRNA mRNA upstream 53843 7605613 ~ 7611233 (-) True CI01000063_07605652_07611233
CI01000063_07619266_07636507.mRNA mRNA upstream 67330 7619100 ~ 7637052 (-) True CI01000063_07619266_07636507
CI01000063_07653502_07666823.mRNA mRNA upstream 101732 7653502 ~ 7667711 (-) True CI01000063_07653502_07666823
CI01000063_07678778_07683475.mRNA mRNA upstream 126536 7678306 ~ 7683543 (-) True CI01000063_07678778_07683475
TU302679 other downstream 84251 7439085 ~ 7441435 (-) True G266660
TU302826 other downstream 235462 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 235673 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 235673 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1234740 6288158 ~ 6290946 (-) True G265976

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009537 False 5489 mRNA 0.49 15 NC_007123.7 31638045 ~ 31707939 (+)
bowfin (Amia calva) AMCG00003275 True 4877 mRNA 0.51 13 CM030139.1 16799690 ~ 16821020 (-)