RNA id: CI01000063_07605652_07611233.mRNA


Basic Information

Item Value
RNA id CI01000063_07605652_07611233.mRNA
length 816
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000063_07605652_07611233
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7605613 ~ 7611233 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGAAGTAGTTCTCTCTCTGAAAGTGCAGTACTTTGTAGAAAATGTTCAACTAATTCTTAACAGTGAAGCCCGCCAGCTGTATTATGCCGAACTGAAAGGAAGAGTTTTGAGATCTGAGTGCTTTGAGCTAGAAGGATTATACTTTCAGTTGGCTGCATACGCCCTGCAAGCTGACCTGGGAGACTACGAAGAACGAAACTCTGCATACTTTAGCCCACTGGGCTTTTTCCCTTTTTGGATTATACAGAAGCGTGGGAATGATTATATACTGGAGCACACCCCAACCCTGCATAGGGAGCTTAAGGGAATGTCATCCAGCGAGGCTGCCTTACTTTTCATGCAGGAAGCATATACCTTGTGTGATGTGCCCCTCACCATCTACAGATTGTTCAAAGAAAAGAATAAAGCACAAGGTTATGTCCTCGTGTACTTGACTTCTAGAGGACTGCAGACCTCTGAGATGCTGAATGGAAAACAGTTTCTATATGATTTGCCATGGTCAGATATTCATTCCATTACATTTCAGGGCAGGAAGTTTGACATCCGTGCTGATGGCATGCGTGAGAAAAAGATGGTGTTCTATAGTTTTTCTGTCCTTCATGCCATAAGCCTGCTCCAGCACATACGCAACAGTCACCGGCTGCATCTGAACACAAAGTCCTTAGTCATGCAGCTCAAGGAAAAAAACGGTCAGTGCAAAAGAACAACAAAGCTGTGGAAGAGGGTGGTGCAGAAAAAAAAGATTGAGCATCTATTGTGGTCTGCTGTCTACTAAGCTTCCTGTTTTCCCACCTGTACATTTCCAAGTAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302690 lncRNA downstream 12893 7592454 ~ 7592720 (-) True G266670
TU302862 lncRNA downstream 82623 7522718 ~ 7522990 (-) True G266833
TU302660 lncRNA downstream 89918 7511936 ~ 7515695 (-) True G266647
TU302856 lncRNA downstream 124736 7480634 ~ 7480877 (-) True G266827
TU302705 lncRNA downstream 138466 7464469 ~ 7467147 (-) True G266685
TU302878 lncRNA upstream 77619 7688852 ~ 7689102 (-) True G266846
CI01000063_07578043_07590189.mRNA mRNA downstream 14922 7577976 ~ 7590691 (-) True CI01000063_07578043_07590189
CI01000063_07525686_07551770.mRNA mRNA downstream 53843 7525686 ~ 7551770 (-) True CI01000063_07525686_07551770
CI01000063_07516671_07521503.mRNA mRNA downstream 83752 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
CI01000063_07493274_07509323.mRNA mRNA downstream 96290 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07483274_07486490.mRNA mRNA downstream 117995 7483102 ~ 7487618 (-) True CI01000063_07483274_07486490
CI01000063_07619266_07636507.mRNA mRNA upstream 7867 7619100 ~ 7637052 (-) True CI01000063_07619266_07636507
CI01000063_07653502_07666823.mRNA mRNA upstream 42269 7653502 ~ 7667711 (-) True CI01000063_07653502_07666823
CI01000063_07678778_07683475.mRNA mRNA upstream 67073 7678306 ~ 7683543 (-) True CI01000063_07678778_07683475
CI01000063_07790166_07793320.mRNA mRNA upstream 178805 7790038 ~ 7795339 (-) True CI01000063_07790166_07793320
TU302679 other downstream 164178 7439085 ~ 7441435 (-) True G266660
TU302826 other downstream 315389 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 315600 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 315600 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1314667 6288158 ~ 6290946 (-) True G265976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009531 True 1331 mRNA 0.44 12 NC_007123.7 31537604 ~ 31556004 (+)