RNA id: TU297382



Basic Information


Item Value
RNA id TU297382
length 998
RNA type TUCP
GC content 0.44
exon number 2
gene id G261984
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 665800 ~ 667382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGAATTCAGGCCAGCTGATAATACCTAGAATATCAAAATCAACCACAGGTGGTAGATCCTTCTCCTATTTGGCACCTAAACTCTGGAACAATCTTCCTAGCATTGTTCGGGAAGCAGACACACTCTGTCAGTTTAAATCTAGACTAAAAACGCATTTCTTTAACCTGGCATACACATAACACATTATCAATTTATATTTTCAAATCCGTTAAAGGATTATTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTTTCTGTTTATCCCGAGGTTTACCGTAGTCAACCGGATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACACGACCACAACGCAGCCCTGAAGTATCAGCAGAGATTGAGTCAACTAGATCATCCATTGTGAAGGCCTCATCGACACGACAACCAGTGGCGCAGTTCCTCAACAACCGTCCATGCCGGCGTGATGAATACGATCCTCAACTGGATGGAACTGAAATAAATACTTTGAATGTTGCGATCCTATCGGACTTGTGATAGCAACCTGAATCGTAACAAAGCACTGTTCGCCAGAGGAGAACCGGCCCCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTAAACACCTATTTGCCACTTGTTTGCCACCTGATGTCACCTGTTGGAGGTTCCGTGCCGCTGTCGCCGTTGGCTTGCTTAGTTGGGGACACTTGACATTTGACACTCAACAGTGCTTTGATCTGCCTGCATTGACACTATTCTTTAAGAGCTGCTGTGCAGCCAAAAATATATACCAGTTATCAATGTAAAGCTGCTTTGACACAATCTGCATTGTAAAAAGCGCTATATAAATAAAGGTGACTTGACTTCCAATATTTCATCATCTGGCTCGCGCTTGGATTGATATGGTAAAATCGTTACTGTCTGTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297456 lncRNA upstream 10139 655436 ~ 655661 (+) True G262053
TU297444 lncRNA upstream 36690 628910 ~ 629110 (+) True G262043
TU297443 lncRNA upstream 37227 628272 ~ 628573 (+) True G262042
TU297438 lncRNA upstream 40991 624559 ~ 624809 (+) True G262037
TU297435 lncRNA upstream 44368 621117 ~ 621432 (+) True G262034
TU297464 lncRNA downstream 42728 710110 ~ 710428 (+) False G262060
TU297463 lncRNA downstream 42791 710173 ~ 710428 (+) False G262060
TU297547 lncRNA downstream 89005 756387 ~ 764451 (+) False G262135
TU297551 lncRNA downstream 89086 756468 ~ 764451 (+) True G262135
TU297487 lncRNA downstream 122080 789462 ~ 809644 (+) True G262080
CI01000063_00659693_00662317.mRNA mRNA upstream 3375 659630 ~ 662425 (+) True CI01000063_00659693_00662317
CI01000063_00562850_00563761.mRNA mRNA upstream 101878 562750 ~ 563922 (+) True CI01000063_00562850_00563761
CI01000063_00533801_00557577.mRNA mRNA upstream 108094 533801 ~ 557706 (+) False CI01000063_00533801_00557577
CI01000063_00478894_00523263.mRNA mRNA upstream 142439 478894 ~ 523361 (+) True CI01000063_00478894_00523263
CI01000063_00473977_00476385.mRNA mRNA upstream 188862 473977 ~ 476938 (+) True CI01000063_00473977_00476385
CI01000063_00669808_00687564.mRNA mRNA downstream 2426 669808 ~ 687816 (+) True CI01000063_00669808_00687564
CI01000063_00737387_00744421.mRNA mRNA downstream 69702 737084 ~ 745002 (+) True CI01000063_00737387_00744421
CI01000063_00768000_00776500.mRNA mRNA downstream 99501 766883 ~ 777761 (+) True CI01000063_00768000_00776500
CI01000063_00811088_00811849.mRNA mRNA downstream 143499 810881 ~ 812197 (+) True CI01000063_00811088_00811849
CI01000063_00839103_00843726.mRNA mRNA downstream 171131 838513 ~ 843762 (+) True CI01000063_00839103_00843726
TU297362 other upstream 107466 552799 ~ 553605 (+) True G261973
TU297034 other upstream 391350 252412 ~ 274450 (+) True G261700
TU297466 other downstream 42791 710173 ~ 710554 (+) True G262060
TU297621 other downstream 476489 1143871 ~ 1145007 (+) True G262194
TU297877 other downstream 1574026 2241408 ~ 2242965 (+) True G262423
TU297890 other downstream 2046233 2713615 ~ 2714517 (+) True G262436
TU301223 other downstream 5246401 5913783 ~ 5919029 (+) True G265391

Expression Profile