RNA id: TU297547



Basic Information


Item Value
RNA id TU297547
length 632
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G262135
representative False

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 756387 ~ 764451 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACAGTTTGCCCTCGCTCTTTCTTCTTCCTCCTCCTCCCGGGAGCATTGAAAACATCTATGTGCTCAGGCTTTTGACAGTCAGGCTGACGGTCGGGCCCATGATGAATATTTTTCTGAAGGCCCGCCTTCTGGCTTGATAGTGAAAAGTACTTTTAGGCTTAAAAGAACTTTGGAATTTATCCTTCTTCATACAAAGAAAGGAAGGGAAATCTTCGTTCTACGAGCCGCAGGAGCTTACAACTCATTCAAGTGCCACCAGTGTGTTTTTGGAGTATTTCTTCTTTCTATTTCATCTTTCGTCTGAGATTTCTTCCCTTGCAACTGTTGGGGGCCATGACACAAAACGTGTCACATGGAACATCCTTTCCCGCATGTTCCGTGATGATGTTGGGAGGAGGATCAACTAGAAGGGCGTGAATGGTAAAAAAGCATTCAACCAGATGGAGTTTAAGAAGTTCCTCCTGTGTGCTGTGAGAAAGAGCCATGTATCACGTGCCGCCACTGATGATGAAATTACAAAACACACAATACGGTGGTTCAGCCTGGCAGCTGATAGGGGAAGCTCAAGGAACCGTCCCACTGTGAGCACCCAACAGTAGAGTTTTTCAGAGTTTCATTGTTAACTTCAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297464 lncRNA upstream 45959 710110 ~ 710428 (+) False G262060
TU297463 lncRNA upstream 45959 710173 ~ 710428 (+) False G262060
TU297456 lncRNA upstream 100726 655436 ~ 655661 (+) True G262053
TU297444 lncRNA upstream 127277 628910 ~ 629110 (+) True G262043
TU297443 lncRNA upstream 127814 628272 ~ 628573 (+) True G262042
TU297487 lncRNA downstream 25011 789462 ~ 809644 (+) True G262080
TU297567 lncRNA downstream 65226 829677 ~ 829953 (+) True G262150
TU297569 lncRNA downstream 67009 831460 ~ 831718 (+) True G262152
TU297524 lncRNA downstream 90711 855162 ~ 855434 (+) True G262117
TU297520 lncRNA downstream 104019 868470 ~ 871519 (+) True G262113
CI01000063_00737387_00744421.mRNA mRNA upstream 11385 737084 ~ 745002 (+) True CI01000063_00737387_00744421
CI01000063_00669808_00687564.mRNA mRNA upstream 68571 669808 ~ 687816 (+) True CI01000063_00669808_00687564
CI01000063_00659693_00662317.mRNA mRNA upstream 93962 659630 ~ 662425 (+) True CI01000063_00659693_00662317
CI01000063_00562850_00563761.mRNA mRNA upstream 192465 562750 ~ 563922 (+) True CI01000063_00562850_00563761
CI01000063_00533801_00557577.mRNA mRNA upstream 198681 533801 ~ 557706 (+) False CI01000063_00533801_00557577
CI01000063_00768000_00776500.mRNA mRNA downstream 2432 766883 ~ 777761 (+) True CI01000063_00768000_00776500
CI01000063_00811088_00811849.mRNA mRNA downstream 46430 810881 ~ 812197 (+) True CI01000063_00811088_00811849
CI01000063_00839103_00843726.mRNA mRNA downstream 74062 838513 ~ 843762 (+) True CI01000063_00839103_00843726
CI01000063_00861534_00863874.mRNA mRNA downstream 96528 860979 ~ 864105 (+) True CI01000063_00861534_00863874
CI01000063_00889956_00941586.mRNA mRNA downstream 125505 889956 ~ 941740 (+) True CI01000063_00889956_00941586
TU297466 other upstream 45833 710173 ~ 710554 (+) True G262060
TU297382 other upstream 89005 665800 ~ 667382 (+) True G261984
TU297362 other upstream 198053 552799 ~ 553605 (+) True G261973
TU297034 other upstream 481937 252412 ~ 274450 (+) True G261700
TU297621 other downstream 379420 1143871 ~ 1145007 (+) True G262194
TU297877 other downstream 1476957 2241408 ~ 2242965 (+) True G262423
TU297890 other downstream 1949164 2713615 ~ 2714517 (+) True G262436
TU301223 other downstream 5149332 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 5570827 6335278 ~ 6335601 (+) True G265462

Expression Profile