RNA id: TU298487


Basic Information

Item Value
RNA id TU298487
length 416
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G262959
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 945147 ~ 945562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATGAACAGTGAGGGGGAAGAGAAAGAGTCTAGAAGGACCCTCGTGAACATGGGAAATGTCACCAGGGATGAAGAGAGAGGATAAAAGAAAATGAGAGCAAGAAGATTTCAGAGAGGGATGAAAGTAAGAAGCGAAAGGAGTCAGGGGAACATTTGAAATGAGTCTTGGCAGCAAAACAAAGGCTTTGCCTGACTGTGTCATCTACCAGGCACACAAGCAGTCGGTGAGAGTGGCACAACATTCATCGGCTCACGATCACCCCCGACGCTTGTCCATCAGTCTGTTAGGACGATCATCCTCAACCCAAATCAAATCACTAACAATGTCAACCCTGCAATGGAGTGTTCTACCATAGCCCATTCTTTTTTATCGACTGCTAAAAAAAGATCAAAGAGCCCTAGACGGTAATGTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298452 lncRNA downstream 68862 873544 ~ 876285 (-) True G262925
TU298368 lncRNA downstream 102039 839451 ~ 843108 (-) True G262862
TU298449 lncRNA downstream 110802 834059 ~ 834345 (-) True G262922
TU298440 lncRNA downstream 119714 825209 ~ 825433 (-) True G262913
TU298356 lncRNA downstream 234584 710177 ~ 710563 (-) True G262854
TU298488 lncRNA upstream 462 946024 ~ 946283 (-) True G262960
TU298492 lncRNA upstream 2390 947952 ~ 948214 (-) True G262964
TU298493 lncRNA upstream 3026 948588 ~ 949001 (-) True G262965
TU298495 lncRNA upstream 4615 950177 ~ 950529 (-) True G262967
TU298501 lncRNA upstream 7595 953157 ~ 953379 (-) True G262970
CI01000063_00864936_00881531.mRNA mRNA downstream 63616 864319 ~ 881531 (-) True CI01000063_00864936_00881531
CI01000063_00846790_00858096.mRNA mRNA downstream 85769 846622 ~ 859378 (-) True CI01000063_00846790_00858096
CI01000063_00808299_00809636.mRNA mRNA downstream 135511 808060 ~ 809636 (-) True CI01000063_00808299_00809636
CI01000063_00805911_00806593.mRNA mRNA downstream 138515 805911 ~ 806632 (-) True CI01000063_00805911_00806593
CI01000063_00792983_00795702.mRNA mRNA downstream 145933 792436 ~ 799214 (-) True CI01000063_00792983_00795702
CI01000063_00985283_00999270.mRNA mRNA upstream 38959 984521 ~ 999270 (-) True CI01000063_00985283_00999270
CI01000063_01015926_01020021.mRNA mRNA upstream 70364 1015926 ~ 1020021 (-) True CI01000063_01015926_01020021
CI01000063_01023917_01026650.mRNA mRNA upstream 78091 1023653 ~ 1027279 (-) True CI01000063_01023917_01026650
CI01000063_01029007_01032212.mRNA mRNA upstream 83420 1028982 ~ 1032212 (-) True CI01000063_01029007_01032212
CI01000063_01070457_01077403.mRNA mRNA upstream 124661 1070223 ~ 1077862 (-) True CI01000063_01070457_01077403
TU298670 other upstream 723849 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 1230877 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 1379550 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1780197 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 4216932 5183279 ~ 5183287 (-) True G265567

Expression Profile