RNA id: TU297607


Basic Information

Item Value
RNA id TU297607
length 921
lncRNA type intronic
GC content 0.43
exon number 2
gene id G262189
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1118933 ~ 1119876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGGGGTTTTCAACCTATGGGGGGGGGGGCCGCGAGCACCTGTTAATTCAGAAGCACACACTGGAGTGAAACAGCTATAAATGTGAGATTTTACTAGCAAATATTTAGTCATCCACTAGAGGGGGAAATTTGACTATTCTCCCAGCTAATCATTGGCTATGGTTACAGCAGGTTTGGCGCAACTGAATTTTAGCAAAACAACTAAAAACAAAATAGACTGGTGGCTTGTAAAAATCAAGAATATCATAGATGATAAAAACTAAGGTTAAACTGAATGAAAAACAAGCTCAGCCGTCACTCTAAAGTCGGTAAGCTGTTTATATTGTTTTTAACGAATATCCTGTCTACACCGGACGTGAGCGGTGCGATGCAACACATAAAATCCCACAGTAAATTGATGCCTCGTTCTATTTCTGACATACTCCGTTACTTTTGACACAAAGAACAAATGGATTTGCAATGGTCACTGTTACATCCAGTGTAGACATCCTCAAGCTGTTGCGGCAATGTGCGACGAGACGCGTAGAAATAGGATTTGCACACTTTATGCAGCATATTAAGTAATATAGCAATGATGCTCAACAGCATCAAGTGATCTATGCATGATGTTTGCGTTGGTTGGGGGGGGGCGCAAGTGAAATTAAATAAACGCAGGGGGGCACCTGTCCTACGCAGTTGACGCAGTGCAGTGATTCCGTGTTTACATCTGAACGCCGGCTCAGTATTGGTTGACGCCTGTTCACGTGAGCACCAAGACACATGCGTGTGATGCTGACACAGGAGCCATCCTATACAGAGTCGGCATTCTAACGAAGAAAACGAAAGCTCTGCAATGTGCCTTCAGCGTAAACTACATAGGAGAACGAGAGGAAATTGTTGAATAAAATCATTATTTTTGTTTTGTTTTTGCGGACAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297602 lncRNA upstream 17579 1101147 ~ 1101354 (+) True G262185
TU297591 lncRNA upstream 140919 977802 ~ 978014 (+) True G262174
TU297586 lncRNA upstream 144323 974080 ~ 974610 (+) True G262169
TU297585 lncRNA upstream 144888 973833 ~ 974045 (+) True G262168
TU297581 lncRNA upstream 146564 971969 ~ 972369 (+) True G262164
TU297610 lncRNA downstream 13114 1132990 ~ 1135518 (+) True G262191
TU297615 lncRNA downstream 19476 1139352 ~ 1141143 (+) False G262194
TU297619 lncRNA downstream 19476 1139352 ~ 1141143 (+) False G262194
TU297620 lncRNA downstream 19476 1139352 ~ 1141143 (+) False G262194
TU297616 lncRNA downstream 23305 1143181 ~ 1145007 (+) False G262194
CI01000063_01095386_01102295.mRNA mRNA upstream 16638 1095386 ~ 1102295 (+) True CI01000063_01095386_01102295
CI01000063_01089059_01094639.mRNA mRNA upstream 23911 1089059 ~ 1095022 (+) True CI01000063_01089059_01094639
CI01000063_01047868_01059684.mRNA mRNA upstream 59208 1047868 ~ 1059725 (+) True CI01000063_01047868_01059684
CI01000063_01008945_01013177.mRNA mRNA upstream 105384 1008945 ~ 1013549 (+) True CI01000063_01008945_01013177
CI01000063_00889956_00941586.mRNA mRNA upstream 177193 889956 ~ 941740 (+) True CI01000063_00889956_00941586
CI01000063_01168018_01168572.mRNA mRNA downstream 45906 1165782 ~ 1169391 (+) True CI01000063_01168018_01168572
CI01000063_01219046_01224170.mRNA mRNA downstream 99024 1218900 ~ 1225323 (+) True CI01000063_01219046_01224170
CI01000063_01240976_01328455.mRNA mRNA downstream 119506 1239382 ~ 1328688 (+) True CI01000063_01240976_01328455
CI01000063_01384163_01441190.mRNA mRNA downstream 263322 1383198 ~ 1441349 (+) True CI01000063_01384163_01441190
CI01000063_01456382_01458080.mRNA mRNA downstream 336215 1456091 ~ 1459374 (+) True CI01000063_01456382_01458080
TU297466 other upstream 408379 710173 ~ 710554 (+) True G262060
TU297382 other upstream 451551 665800 ~ 667382 (+) True G261984
TU297362 other upstream 560599 552799 ~ 553605 (+) True G261973
TU297034 other upstream 844483 252412 ~ 274450 (+) True G261700
TU297621 other downstream 23995 1143871 ~ 1145007 (+) True G262194
TU297877 other downstream 1121532 2241408 ~ 2242965 (+) True G262423
TU297890 other downstream 1593739 2713615 ~ 2714517 (+) True G262436
TU301223 other downstream 4793907 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 5215402 6335278 ~ 6335601 (+) True G265462

Expression Profile