RNA id: TU297619



Basic Information


Item Value
RNA id TU297619
length 1118
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G262194
representative False

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1139352 ~ 1145007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCAAAAATGAAAAATAGTATTTATTTTCTCATTGTCCTTTCCCAAAAACGGGATCAAAGATTTTACAGAAACCAACATTCATATCTACAATGCGAAAGACCGTGTGGCATTGACAGTCATTGTGAACGAAGTGCAGCATGGGAGTGGACAGTCAGAATTGTGTATAAAAATCAGCCACCGAGATAAAAAAGTGGAGATCTCAGGCTACGATACTGGTTGTCAGCAAAAGTTGTTGGTCAGGTGCCATTTATGCCTTGACCAAGACGGCAAACTCTGTAAAATTAAGGAGAAACAATGAATCAGAAGACATTGTAGAGTGGCTGGAATTATATGTTAGCAATTATGGATTTATAAATAAGCAAATTCCTCACCATCAACTCCAATCTTGCCATCACCATCAGAGTCTCCAGCTTTCAAGAAGGCCTTTGTCTCTGCATCAGTGAGTGCCCTGGCACCAGCAGAGAAGTTCTGCAGGAACAGCCTGAAGAGCACAAGCAAACAATCAACCTCAAGAATTGTTCCAGGGTTTGAACCAGTAAAAAGTGATTTAAGACCAGACTTACTTGAGCTCTTCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCAATGACAGCAAAGGCCTTCTTGATGTCATCAGAACTCTTGGCGGTCAGGCCAACCTTGGCGAAGAAGTCCTTGTACTTGAAGGAGTCAGCAGCTTGGCAGGCCTGCAGGGCTGCAGTGATGTCAGCCTCATTCAGAATACCAGCGAATGCCATGATTAGCCCAGTTCTGGCGTAATCAAACCGCTTAATAAAGAGCGACATCCAAACACGTCCAAACTCCAAGACACAAATTATTCCCACTCCAGGTGGCCAAGAATTAATACGTCAAACCATCCTCTCCGGACCAGCCCGAAGTCGTATGGCCGTTGTTGCTCGAAGTTTTTCTTTCTTCGTTGCAAGATACTGTAAGCTGAGCTCGTGTAGTTTCATCTGTGAAGACACTCACCTCTGGTTGTCTTTAGGGTTTAGGTTTGGATTCGCAAGGATGAAATTGGCTACTGCAGTGAGCACCAACTCCGTGGCTTCCACCTTATATACCACTACTCAACCGAAATATAAGGCATAATGTAATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297610 lncRNA upstream 3834 1132990 ~ 1135518 (+) True G262191
TU297607 lncRNA upstream 19476 1118933 ~ 1119876 (+) True G262189
TU297602 lncRNA upstream 37998 1101147 ~ 1101354 (+) True G262185
TU297591 lncRNA upstream 161338 977802 ~ 978014 (+) True G262174
TU297586 lncRNA upstream 164742 974080 ~ 974610 (+) True G262169
TU297616 lncRNA downstream 2038 1143181 ~ 1145007 (+) False G262194
TU297644 lncRNA downstream 55225 1196368 ~ 1198837 (+) True G262211
TU297714 lncRNA downstream 368136 1509279 ~ 1509628 (+) True G262266
TU297482 lncRNA downstream 392710 1533853 ~ 1535375 (+) True CI01000063_01533946_01534527
TU297508 lncRNA downstream 514059 1655202 ~ 1656049 (+) True G262101
CI01000063_01095386_01102295.mRNA mRNA upstream 37057 1095386 ~ 1102295 (+) True CI01000063_01095386_01102295
CI01000063_01089059_01094639.mRNA mRNA upstream 44330 1089059 ~ 1095022 (+) True CI01000063_01089059_01094639
CI01000063_01047868_01059684.mRNA mRNA upstream 79627 1047868 ~ 1059725 (+) True CI01000063_01047868_01059684
CI01000063_01008945_01013177.mRNA mRNA upstream 125803 1008945 ~ 1013549 (+) True CI01000063_01008945_01013177
CI01000063_00889956_00941586.mRNA mRNA upstream 197612 889956 ~ 941740 (+) True CI01000063_00889956_00941586
CI01000063_01168018_01168572.mRNA mRNA downstream 24639 1165782 ~ 1169391 (+) True CI01000063_01168018_01168572
CI01000063_01219046_01224170.mRNA mRNA downstream 77757 1218900 ~ 1225323 (+) True CI01000063_01219046_01224170
CI01000063_01240976_01328455.mRNA mRNA downstream 98239 1239382 ~ 1328688 (+) True CI01000063_01240976_01328455
CI01000063_01384163_01441190.mRNA mRNA downstream 242055 1383198 ~ 1441349 (+) True CI01000063_01384163_01441190
CI01000063_01456382_01458080.mRNA mRNA downstream 314948 1456091 ~ 1459374 (+) True CI01000063_01456382_01458080
TU297466 other upstream 428798 710173 ~ 710554 (+) True G262060
TU297382 other upstream 471970 665800 ~ 667382 (+) True G261984
TU297362 other upstream 581018 552799 ~ 553605 (+) True G261973
TU297034 other upstream 864902 252412 ~ 274450 (+) True G261700
TU297621 other downstream 2728 1143871 ~ 1145007 (+) True G262194
TU297877 other downstream 1100265 2241408 ~ 2242965 (+) True G262423
TU297890 other downstream 1572472 2713615 ~ 2714517 (+) True G262436
TU301223 other downstream 4772640 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 5194135 6335278 ~ 6335601 (+) True G265462

Expression Profile