RNA id: TU298563



Basic Information


Item Value
RNA id TU298563
length 893
lncRNA type antisense_over
GC content 0.35
exon number 3
gene id G263021
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1310741 ~ 1329440 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACATTGCAGAGGTAACTATCCATATGTTGGCACAATATTCTGTACCTTTACAAAAGAGGGGAATGTATACAAAAATGCTTTTAGGTGTATCAGTGAGATACAAATGCTTTGGGACACTCCTAAAAAGGCAAAGTTCAAAAACTTTGAGCTGTAATAATGTATAAATTAATCGTATGTGCTATGATTAACTAAAAATGAGCTAAATATAGAGCTATCCCTGTCTTAAGGCTCATAAGTCTTTGCCTTTCCAGAGTATTTTGTGGGGAAAATAATCTATGGTTGAATGTTTGACAGTAACACATGACGGCTTTTTAAATTACACAAACCTGTAGAAAAGTACACAGCAATTAAGGGATGCAATGTCATTTTTACATGTACAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAATAATGTAATGAATCATGTCACCTTTGCCATACTCCTATTCTATAAAAACTGTTGTACTCTCTGTCAGGGGGAATTCTCAGAAACTGATCTGAGATCCTCCCGGCCATGATTAAAGCATATTCCAAGGCATTGTCTGGAGTCTAATTATTGCTGCACAACAGGCTAGAGCACTAGAGATCTTATTTTCATTCCTAAATGATAGTGCTGAAGTAGAACACTAGGGACCTTATTCCCAAGTGATAGTGTTCACAAGGGGCGAGACGTCGTCCGACTCGAACAGGTCTCAAAGTGGAGACGCCTTGTAGATAGTGTTGTCACGGTACCAAAATTCCAGTAGTCGGTACCAATACCATAAAAATTTTACGGTTCTCGGTACCAATTTCAGTACCACAGCAAAATCTGTTGGAACTATTTTACATAGCCTATTTTAAAAACATATTGTATATATTGTATACATGGTAATCATACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU298572 lncRNA downstream 28965 1281027 ~ 1281776 (-) True G263029
TU298529 lncRNA downstream 154789 1155716 ~ 1155952 (-) True G262997
TU298536 lncRNA downstream 156128 1154399 ~ 1154613 (-) True G263004
TU298534 lncRNA downstream 157614 1152889 ~ 1153127 (-) True G263002
TU298531 lncRNA downstream 160872 1149612 ~ 1149869 (-) True G262999
TU298609 lncRNA upstream 623 1330063 ~ 1330272 (-) True CI01000063_01329725_01330246
TU298614 lncRNA upstream 7154 1336594 ~ 1336815 (-) True G263071
TU298624 lncRNA upstream 44026 1373466 ~ 1373863 (-) True G263081
TU298672 lncRNA upstream 171395 1500835 ~ 1504950 (-) True G263119
TU298690 lncRNA upstream 179868 1509308 ~ 1509573 (-) True G263132
CI01000063_01228002_01232509.mRNA mRNA downstream 77748 1226473 ~ 1232993 (-) True CI01000063_01228002_01232509
CI01000063_01216041_01217287.mRNA mRNA downstream 93178 1215715 ~ 1217563 (-) True CI01000063_01216041_01217287
CI01000063_01200458_01207989.mRNA mRNA downstream 102752 1200388 ~ 1207989 (-) True CI01000063_01200458_01207989
CI01000063_01188049_01192674.mRNA mRNA downstream 118067 1188049 ~ 1192674 (-) True CI01000063_01188049_01192674
CI01000063_01170694_01187133.mRNA mRNA downstream 123608 1170282 ~ 1187133 (-) True CI01000063_01170694_01187133
CI01000063_01329725_01330246.mRNA mRNA upstream 271 1329711 ~ 1330246 (-) False CI01000063_01329725_01330246
CI01000063_01473401_01482295.mRNA mRNA upstream 143961 1473401 ~ 1482295 (-) True CI01000063_01473401_01482295
CI01000063_01483554_01486900.mRNA mRNA upstream 153848 1483288 ~ 1486900 (-) True CI01000063_01483554_01486900
CI01000063_01510130_01526860.mRNA mRNA upstream 180630 1510070 ~ 1527772 (-) True CI01000063_01510130_01526860
CI01000063_01541176_01541412.mRNA mRNA upstream 211646 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
TU298670 other upstream 339971 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 846999 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 995672 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1396319 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3833054 5183279 ~ 5183287 (-) True G265567

Expression Profile