RNA id: TU298614


Basic Information

Item Value
RNA id TU298614
length 222
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G263071
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1336594 ~ 1336815 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTCCTAATTTACTGCTTATTAATATTTAGTAAGGTAGTTGTTAAGTTTAGGTGTTGAGTAGGATTAAGAATGTAGAATAAGGTCATGCAGAATAAGGCATTAATATGTGCTTAATAAGTACTAATAAATTGCCAATATTCTAGTAATATGCAGGCTAATAAGCAACTAGTTAAAAGACCCTAAAATAAAGTGTTACCAAAAACATATACCCAACCGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298609 lncRNA downstream 6322 1330063 ~ 1330272 (-) True CI01000063_01329725_01330246
TU298563 lncRNA downstream 7154 1310741 ~ 1329440 (-) True G263021
TU298572 lncRNA downstream 54818 1281027 ~ 1281776 (-) True G263029
TU298529 lncRNA downstream 180642 1155716 ~ 1155952 (-) True G262997
TU298536 lncRNA downstream 181981 1154399 ~ 1154613 (-) True G263004
TU298624 lncRNA upstream 36651 1373466 ~ 1373863 (-) True G263081
TU298672 lncRNA upstream 164020 1500835 ~ 1504950 (-) True G263119
TU298690 lncRNA upstream 172493 1509308 ~ 1509573 (-) True G263132
TU298740 lncRNA upstream 198948 1535763 ~ 1536121 (-) True G263178
TU298742 lncRNA upstream 203138 1539953 ~ 1540199 (-) True G263180
CI01000063_01329725_01330246.mRNA mRNA downstream 6348 1329711 ~ 1330246 (-) False CI01000063_01329725_01330246
CI01000063_01228002_01232509.mRNA mRNA downstream 103601 1226473 ~ 1232993 (-) True CI01000063_01228002_01232509
CI01000063_01216041_01217287.mRNA mRNA downstream 119031 1215715 ~ 1217563 (-) True CI01000063_01216041_01217287
CI01000063_01200458_01207989.mRNA mRNA downstream 128605 1200388 ~ 1207989 (-) True CI01000063_01200458_01207989
CI01000063_01188049_01192674.mRNA mRNA downstream 143920 1188049 ~ 1192674 (-) True CI01000063_01188049_01192674
CI01000063_01473401_01482295.mRNA mRNA upstream 136586 1473401 ~ 1482295 (-) True CI01000063_01473401_01482295
CI01000063_01483554_01486900.mRNA mRNA upstream 146473 1483288 ~ 1486900 (-) True CI01000063_01483554_01486900
CI01000063_01510130_01526860.mRNA mRNA upstream 173255 1510070 ~ 1527772 (-) True CI01000063_01510130_01526860
CI01000063_01541176_01541412.mRNA mRNA upstream 204271 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01548731_01553329.mRNA mRNA upstream 211632 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
TU298670 other upstream 332596 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 839624 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 988297 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1388944 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3825679 5183279 ~ 5183287 (-) True G265567

Expression Profile