RNA id: TU298624


Basic Information

Item Value
RNA id TU298624
length 398
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G263081
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1373466 ~ 1373863 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGACATATCAAATGTTTAAACTGAGAAAATGTATCATTTTAAGGGAAAAATAAGTTGATTTTAAATTTCATGGCATCAACACATCTCAAAAAAGTTGGGACAAGGCCATGTTTACCACTGTGTGGCATCCCCTCTTCTTTTTATAACAGTCTGCAAACATCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCATCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGCTGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGAGTGAAAGATCTGGACTGCAGGCTGGCCATTTCAGTACCTGGATCCTTCTTCTACGCAGCCTTGATGTTGTAATTGATGCAGTATGTGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298614 lncRNA downstream 36651 1336594 ~ 1336815 (-) True G263071
TU298609 lncRNA downstream 43194 1330063 ~ 1330272 (-) True CI01000063_01329725_01330246
TU298563 lncRNA downstream 44026 1310741 ~ 1329440 (-) True G263021
TU298572 lncRNA downstream 91690 1281027 ~ 1281776 (-) True G263029
TU298529 lncRNA downstream 217514 1155716 ~ 1155952 (-) True G262997
TU298672 lncRNA upstream 126972 1500835 ~ 1504950 (-) True G263119
TU298690 lncRNA upstream 135445 1509308 ~ 1509573 (-) True G263132
TU298740 lncRNA upstream 161900 1535763 ~ 1536121 (-) True G263178
TU298742 lncRNA upstream 166090 1539953 ~ 1540199 (-) True G263180
TU298693 lncRNA upstream 166622 1540485 ~ 1540792 (-) True G263135
CI01000063_01329725_01330246.mRNA mRNA downstream 43220 1329711 ~ 1330246 (-) False CI01000063_01329725_01330246
CI01000063_01228002_01232509.mRNA mRNA downstream 140473 1226473 ~ 1232993 (-) True CI01000063_01228002_01232509
CI01000063_01216041_01217287.mRNA mRNA downstream 155903 1215715 ~ 1217563 (-) True CI01000063_01216041_01217287
CI01000063_01200458_01207989.mRNA mRNA downstream 165477 1200388 ~ 1207989 (-) True CI01000063_01200458_01207989
CI01000063_01188049_01192674.mRNA mRNA downstream 180792 1188049 ~ 1192674 (-) True CI01000063_01188049_01192674
CI01000063_01473401_01482295.mRNA mRNA upstream 99538 1473401 ~ 1482295 (-) True CI01000063_01473401_01482295
CI01000063_01483554_01486900.mRNA mRNA upstream 109425 1483288 ~ 1486900 (-) True CI01000063_01483554_01486900
CI01000063_01510130_01526860.mRNA mRNA upstream 136207 1510070 ~ 1527772 (-) True CI01000063_01510130_01526860
CI01000063_01541176_01541412.mRNA mRNA upstream 167223 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01548731_01553329.mRNA mRNA upstream 174584 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
TU298670 other upstream 295548 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 802576 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 951249 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1351896 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3788631 5183279 ~ 5183287 (-) True G265567

Expression Profile