RNA id: TU298690


Basic Information

Item Value
RNA id TU298690
length 266
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G263132
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1509308 ~ 1509573 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGCTTCATGAAGCTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTGGTTCGGAGCGTGTATCAAACTGCCAAAGTCACATGAACTACTGAAATTTCGAAACGCTTATGATGTAACGAAGCCTCGTTTACTGAATTCACGTGATTTTGGTGCTCTGAACCACTGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATTGCCCATCACTAGATATAGTTGAATAAAGTCGTTATTTAGTTTTTTTTGGCGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298672 lncRNA downstream 4358 1500835 ~ 1504950 (-) True G263119
TU298624 lncRNA downstream 135445 1373466 ~ 1373863 (-) True G263081
TU298614 lncRNA downstream 172493 1336594 ~ 1336815 (-) True G263071
TU298609 lncRNA downstream 179036 1330063 ~ 1330272 (-) True CI01000063_01329725_01330246
TU298563 lncRNA downstream 179868 1310741 ~ 1329440 (-) True G263021
TU298740 lncRNA upstream 26190 1535763 ~ 1536121 (-) True G263178
TU298742 lncRNA upstream 30380 1539953 ~ 1540199 (-) True G263180
TU298693 lncRNA upstream 30912 1540485 ~ 1540792 (-) True G263135
TU298744 lncRNA upstream 53477 1563050 ~ 1563521 (-) True G263182
TU298745 lncRNA upstream 54230 1563803 ~ 1566540 (-) True G263183
CI01000063_01483554_01486900.mRNA mRNA downstream 22408 1483288 ~ 1486900 (-) True CI01000063_01483554_01486900
CI01000063_01473401_01482295.mRNA mRNA downstream 27013 1473401 ~ 1482295 (-) True CI01000063_01473401_01482295
CI01000063_01329725_01330246.mRNA mRNA downstream 179062 1329711 ~ 1330246 (-) False CI01000063_01329725_01330246
CI01000063_01228002_01232509.mRNA mRNA downstream 276315 1226473 ~ 1232993 (-) True CI01000063_01228002_01232509
CI01000063_01216041_01217287.mRNA mRNA downstream 291745 1215715 ~ 1217563 (-) True CI01000063_01216041_01217287
CI01000063_01510130_01526860.mRNA mRNA upstream 497 1510070 ~ 1527772 (-) True CI01000063_01510130_01526860
CI01000063_01541176_01541412.mRNA mRNA upstream 31513 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01548731_01553329.mRNA mRNA upstream 38874 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
CI01000063_01554604_01555607.mRNA mRNA upstream 44407 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01557732_01560541.mRNA mRNA upstream 48080 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
TU298670 other upstream 159838 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 666866 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 815539 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1216186 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3652921 5183279 ~ 5183287 (-) True G265567

Expression Profile