RNA id: TU298693


Basic Information

Item Value
RNA id TU298693
length 308
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G263135
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1540485 ~ 1540792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAAACACACACCAATCAAGTTAATTAATTTAGAGACCAGTTACAATACAATGAAATCAAACATTGGAACAAAATGTCAAAAAATACATATAATATTAGTCATTACATATGCATTTGAACCAAAGTAAATTTAATACAAGTTGGCCTATAGTTTATTTGATTTCACAAGAGGAACCATGCTGTGTTGCTTTGTTGCTGTGTTGCAAAACAGCATTAAACCACAAAAGATGCAAGGCTTTGCTTCACTTCAACAGGGTCAGCGAGTGCACATGACAAAATTCTTGCCCTCATTCCACTTCTGCTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298742 lncRNA downstream 286 1539953 ~ 1540199 (-) True G263180
TU298740 lncRNA downstream 4364 1535763 ~ 1536121 (-) True G263178
TU298690 lncRNA downstream 30912 1509308 ~ 1509573 (-) True G263132
TU298672 lncRNA downstream 35535 1500835 ~ 1504950 (-) True G263119
TU298624 lncRNA downstream 166622 1373466 ~ 1373863 (-) True G263081
TU298744 lncRNA upstream 22258 1563050 ~ 1563521 (-) True G263182
TU298745 lncRNA upstream 23011 1563803 ~ 1566540 (-) True G263183
TU298685 lncRNA upstream 49909 1590701 ~ 1593377 (-) True G263127
TU298689 lncRNA upstream 89035 1629827 ~ 1632556 (-) True G263131
TU298842 lncRNA upstream 114230 1655022 ~ 1655367 (-) True G263271
CI01000063_01510130_01526860.mRNA mRNA downstream 12713 1510070 ~ 1527772 (-) True CI01000063_01510130_01526860
CI01000063_01483554_01486900.mRNA mRNA downstream 53585 1483288 ~ 1486900 (-) True CI01000063_01483554_01486900
CI01000063_01473401_01482295.mRNA mRNA downstream 58190 1473401 ~ 1482295 (-) True CI01000063_01473401_01482295
CI01000063_01329725_01330246.mRNA mRNA downstream 210239 1329711 ~ 1330246 (-) False CI01000063_01329725_01330246
CI01000063_01228002_01232509.mRNA mRNA downstream 307492 1226473 ~ 1232993 (-) True CI01000063_01228002_01232509
CI01000063_01541176_01541412.mRNA mRNA upstream 294 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01548731_01553329.mRNA mRNA upstream 7655 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
CI01000063_01554604_01555607.mRNA mRNA upstream 13188 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01557732_01560541.mRNA mRNA upstream 16861 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
CI01000063_01603848_01622589.mRNA mRNA upstream 62682 1603474 ~ 1622786 (-) True CI01000063_01603848_01622589
TU298670 other upstream 128619 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 635647 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 784320 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1184967 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3621702 5183279 ~ 5183287 (-) True G265567

Expression Profile