RNA id: TU298851


Basic Information

Item Value
RNA id TU298851
length 445
lncRNA type intronic
GC content 0.40
exon number 1
gene id G263277
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1664634 ~ 1665078 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACATGCAACTAACCTAAGCATATAGTAAGTACATGTCGTTAATTAACATTACTCAGTACTTAAATGTATAATTTTAATATAACAAGGACACCTTAAGCTAAAATGTAACCAAAAATTCTTACCTGATTTCTGCCATACACGCCACCAACACAGCCACTGCCAAACCATGTACAAGCGCTGGCTGAAGTCTTCCTGCTGCCTCCACATTTTCAATGACAGACACACAGCCTATGAAGACAAAAAATGTTGTGCCCACCAGCTCGGCAACACATGGCTGGATTATTCTTTCATATTTGCTCAGAGGTTTGAGTGAGGATTCGTTCTTCTTCAGCAAAGTTTTGTCCAGCTCTTTGAGCTCTAGCTTCTCCATATCCACTGACATTGTGTACCATCAAGTGCAGTGAGAAACTTTGTGACTGTAGCAGAGGGAAGCACTATATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298847 lncRNA downstream 4664 1659557 ~ 1659970 (-) False G263275
TU298848 lncRNA downstream 4664 1659557 ~ 1659970 (-) True G263275
TU298845 lncRNA downstream 6675 1657540 ~ 1657959 (-) True G263274
TU298842 lncRNA downstream 9267 1655022 ~ 1655367 (-) True G263271
TU298689 lncRNA downstream 32078 1629827 ~ 1632556 (-) True G263131
TU298852 lncRNA upstream 452 1665530 ~ 1665799 (-) True G263278
TU298853 lncRNA upstream 1871 1666949 ~ 1667844 (-) True G263279
TU298857 lncRNA upstream 22221 1687299 ~ 1687525 (-) True G263283
TU298860 lncRNA upstream 25680 1690758 ~ 1691170 (-) True G263286
TU298861 lncRNA upstream 26689 1691767 ~ 1692177 (-) False G263287
CI01000063_01603848_01622589.mRNA mRNA downstream 41848 1603474 ~ 1622786 (-) True CI01000063_01603848_01622589
CI01000063_01557732_01560541.mRNA mRNA downstream 104093 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
CI01000063_01554604_01555607.mRNA mRNA downstream 109027 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01548731_01553329.mRNA mRNA downstream 111305 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
CI01000063_01541176_01541412.mRNA mRNA downstream 122063 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01669384_01670016.mRNA mRNA upstream 4239 1669317 ~ 1672019 (-) False CI01000063_01669384_01670016
CI01000063_01682341_01683245.mRNA mRNA upstream 17201 1682279 ~ 1683245 (-) True CI01000063_01682341_01683245
CI01000063_01802070_01805063.mRNA mRNA upstream 136624 1801702 ~ 1805475 (-) True CI01000063_01802070_01805063
CI01000063_01809470_01817028.mRNA mRNA upstream 144317 1809395 ~ 1817028 (-) True CI01000063_01809470_01817028
CI01000063_01856270_01877031.mRNA mRNA upstream 191167 1856245 ~ 1877095 (-) True CI01000063_01856270_01877031
TU298670 other upstream 4333 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 511361 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 660034 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1060681 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3497416 5183279 ~ 5183287 (-) True G265567

Expression Profile