Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU298853 |
| length | 896 |
| lncRNA type | inter_gene |
| GC content | 0.31 |
| exon number | 1 |
| gene id | G263279 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 1666949 ~ 1667844 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU298852 | lncRNA | downstream | 1150 | 1665530 ~ 1665799 (-) | True | G263278 |
| TU298851 | lncRNA | downstream | 1871 | 1664634 ~ 1665078 (-) | True | G263277 |
| TU298847 | lncRNA | downstream | 6979 | 1659557 ~ 1659970 (-) | False | G263275 |
| TU298848 | lncRNA | downstream | 6979 | 1659557 ~ 1659970 (-) | True | G263275 |
| TU298845 | lncRNA | downstream | 8990 | 1657540 ~ 1657959 (-) | True | G263274 |
| TU298857 | lncRNA | upstream | 19455 | 1687299 ~ 1687525 (-) | True | G263283 |
| TU298860 | lncRNA | upstream | 22914 | 1690758 ~ 1691170 (-) | True | G263286 |
| TU298861 | lncRNA | upstream | 23923 | 1691767 ~ 1692177 (-) | False | G263287 |
| TU298864 | lncRNA | upstream | 23923 | 1691767 ~ 1692242 (-) | True | G263287 |
| TU298858 | lncRNA | upstream | 27710 | 1695554 ~ 1695729 (-) | True | G263284 |
| CI01000063_01603848_01622589.mRNA | mRNA | downstream | 44163 | 1603474 ~ 1622786 (-) | True | CI01000063_01603848_01622589 |
| CI01000063_01557732_01560541.mRNA | mRNA | downstream | 106408 | 1557653 ~ 1560541 (-) | True | CI01000063_01557732_01560541 |
| CI01000063_01554604_01555607.mRNA | mRNA | downstream | 111342 | 1553980 ~ 1555607 (-) | True | CI01000063_01554604_01555607 |
| CI01000063_01548731_01553329.mRNA | mRNA | downstream | 113620 | 1548447 ~ 1553329 (-) | True | CI01000063_01548731_01553329 |
| CI01000063_01541176_01541412.mRNA | mRNA | downstream | 124378 | 1541086 ~ 1542571 (-) | True | CI01000063_01541176_01541412 |
| CI01000063_01669384_01670016.mRNA | mRNA | upstream | 1473 | 1669317 ~ 1672019 (-) | False | CI01000063_01669384_01670016 |
| CI01000063_01682341_01683245.mRNA | mRNA | upstream | 14435 | 1682279 ~ 1683245 (-) | True | CI01000063_01682341_01683245 |
| CI01000063_01802070_01805063.mRNA | mRNA | upstream | 133858 | 1801702 ~ 1805475 (-) | True | CI01000063_01802070_01805063 |
| CI01000063_01809470_01817028.mRNA | mRNA | upstream | 141551 | 1809395 ~ 1817028 (-) | True | CI01000063_01809470_01817028 |
| CI01000063_01856270_01877031.mRNA | mRNA | upstream | 188401 | 1856245 ~ 1877095 (-) | True | CI01000063_01856270_01877031 |
| TU298670 | other | upstream | 1567 | 1669411 ~ 1670076 (-) | True | CI01000063_01669384_01670016 |
| TU298810 | other | upstream | 508595 | 2176439 ~ 2177485 (-) | True | G263239 |
| TU298801 | other | upstream | 657268 | 2325112 ~ 2327719 (-) | True | G263230 |
| TU298806 | other | upstream | 1057915 | 2725759 ~ 2726535 (-) | True | CI01000063_02725759_02726399 |
| TU301418 | other | upstream | 3494650 | 5183279 ~ 5183287 (-) | True | G265567 |
