Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU297511 |
| length | 2918 |
| lncRNA type | antisense_over |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G262104 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 1682219 ~ 1686364 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU297508 | lncRNA | upstream | 26170 | 1655202 ~ 1656049 (+) | True | G262101 |
| TU297482 | lncRNA | upstream | 146844 | 1533853 ~ 1535375 (+) | True | CI01000063_01533946_01534527 |
| TU297714 | lncRNA | upstream | 172591 | 1509279 ~ 1509628 (+) | True | G262266 |
| TU297644 | lncRNA | upstream | 483382 | 1196368 ~ 1198837 (+) | True | G262211 |
| TU297616 | lncRNA | upstream | 537212 | 1143181 ~ 1145007 (+) | False | G262194 |
| TU297766 | lncRNA | downstream | 51434 | 1737798 ~ 1738321 (+) | True | G262314 |
| TU297785 | lncRNA | downstream | 119600 | 1805964 ~ 1806185 (+) | True | G262333 |
| TU297529 | lncRNA | downstream | 125144 | 1811508 ~ 1813486 (+) | True | G262122 |
| TU297505 | lncRNA | downstream | 163992 | 1850356 ~ 1854092 (+) | True | G262098 |
| TU297973 | lncRNA | downstream | 314498 | 2000862 ~ 2001064 (+) | True | G262511 |
| CI01000063_01675750_01678399.mRNA | mRNA | upstream | 3761 | 1675501 ~ 1678458 (+) | True | CI01000063_01675750_01678399 |
| CI01000063_01672649_01673337.mRNA | mRNA | upstream | 8834 | 1672574 ~ 1673385 (+) | True | CI01000063_01672649_01673337 |
| CI01000063_01662111_01665744.mRNA | mRNA | upstream | 16475 | 1662111 ~ 1665744 (+) | True | CI01000063_01662111_01665744 |
| CI01000063_01658882_01660951.mRNA | mRNA | upstream | 21077 | 1658882 ~ 1661142 (+) | True | CI01000063_01658882_01660951 |
| CI01000063_01643090_01644021.mRNA | mRNA | upstream | 37782 | 1642653 ~ 1644437 (+) | True | CI01000063_01643090_01644021 |
| CI01000063_01692878_01697954.mRNA | mRNA | downstream | 6030 | 1692394 ~ 1698078 (+) | True | CI01000063_01692878_01697954 |
| CI01000063_01739754_01764028.mRNA | mRNA | downstream | 52880 | 1739244 ~ 1764772 (+) | True | CI01000063_01739754_01764028 |
| CI01000063_01784971_01788682.mRNA | mRNA | downstream | 98607 | 1784971 ~ 1788898 (+) | True | CI01000063_01784971_01788682 |
| CI01000063_01824468_01849446.mRNA | mRNA | downstream | 136490 | 1822854 ~ 1849454 (+) | True | CI01000063_01824468_01849446 |
| CI01000063_01950136_01991996.mRNA | mRNA | downstream | 261810 | 1948174 ~ 1992128 (+) | True | CI01000063_01950136_01991996 |
| TU297621 | other | upstream | 537212 | 1143871 ~ 1145007 (+) | True | G262194 |
| TU297466 | other | upstream | 971665 | 710173 ~ 710554 (+) | True | G262060 |
| TU297382 | other | upstream | 1014837 | 665800 ~ 667382 (+) | True | G261984 |
| TU297362 | other | upstream | 1123885 | 552799 ~ 553605 (+) | True | G261973 |
| TU297034 | other | upstream | 1407769 | 252412 ~ 274450 (+) | True | G261700 |
| TU297877 | other | downstream | 555044 | 2241408 ~ 2242965 (+) | True | G262423 |
| TU297890 | other | downstream | 1027251 | 2713615 ~ 2714517 (+) | True | G262436 |
| TU301223 | other | downstream | 4227419 | 5913783 ~ 5919029 (+) | True | G265391 |
| TU301297 | other | downstream | 4648914 | 6335278 ~ 6335601 (+) | True | G265462 |
