RNA id: TU298857


Basic Information

Item Value
RNA id TU298857
length 227
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G263283
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1687299 ~ 1687525 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCTAGTGATGGGCGATTTCAAAACACTGCTTTACGAATCTTTTGTTTCGAATTAGTGGTTCGGAGCTCCAAAGTCACGTGATTTCAGTAAACGAGGCTTTGTTATGTCATAAGTGTTTCAAAATTTCAATAGTTCACATGATTTTAGCAGTTTGATACACGATCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCAGTGTTTTGAAATCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298853 lncRNA downstream 19455 1666949 ~ 1667844 (-) True G263279
TU298852 lncRNA downstream 21500 1665530 ~ 1665799 (-) True G263278
TU298851 lncRNA downstream 22221 1664634 ~ 1665078 (-) True G263277
TU298847 lncRNA downstream 27329 1659557 ~ 1659970 (-) False G263275
TU298848 lncRNA downstream 27329 1659557 ~ 1659970 (-) True G263275
TU298860 lncRNA upstream 3233 1690758 ~ 1691170 (-) True G263286
TU298861 lncRNA upstream 4242 1691767 ~ 1692177 (-) False G263287
TU298864 lncRNA upstream 4242 1691767 ~ 1692242 (-) True G263287
TU298858 lncRNA upstream 8029 1695554 ~ 1695729 (-) True G263284
TU298859 lncRNA upstream 10245 1697770 ~ 1698235 (-) True G263285
CI01000063_01682341_01683245.mRNA mRNA downstream 4054 1682279 ~ 1683245 (-) True CI01000063_01682341_01683245
CI01000063_01669384_01670016.mRNA mRNA downstream 15280 1669317 ~ 1672019 (-) False CI01000063_01669384_01670016
CI01000063_01603848_01622589.mRNA mRNA downstream 64513 1603474 ~ 1622786 (-) True CI01000063_01603848_01622589
CI01000063_01557732_01560541.mRNA mRNA downstream 126758 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
CI01000063_01554604_01555607.mRNA mRNA downstream 131692 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01802070_01805063.mRNA mRNA upstream 114177 1801702 ~ 1805475 (-) True CI01000063_01802070_01805063
CI01000063_01809470_01817028.mRNA mRNA upstream 121870 1809395 ~ 1817028 (-) True CI01000063_01809470_01817028
CI01000063_01856270_01877031.mRNA mRNA upstream 168720 1856245 ~ 1877095 (-) True CI01000063_01856270_01877031
CI01000063_01890725_01899483.mRNA mRNA upstream 202867 1890392 ~ 1899546 (-) True CI01000063_01890725_01899483
CI01000063_01915989_01944590.mRNA mRNA upstream 227898 1915423 ~ 1944590 (-) True CI01000063_01915989_01944590
TU298670 other downstream 17223 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 488914 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 637587 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1038234 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3474969 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 3500878 5190050 ~ 5190617 (-) True G265565

Expression Profile