RNA id: TU298860


Basic Information

Item Value
RNA id TU298860
length 413
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G263286
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1690758 ~ 1691170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAATATGCTTTGATACATCACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATGAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATTAGCTGTACGCTCTAATCAACAAATTAAAAAAAAAAAACCTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTTAAAATAATTTACAATAAAAAAATGAACTTTTTTACGATATTCTAATTATATGACCAGCACCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298857 lncRNA downstream 3233 1687299 ~ 1687525 (-) True G263283
TU298853 lncRNA downstream 22914 1666949 ~ 1667844 (-) True G263279
TU298852 lncRNA downstream 24959 1665530 ~ 1665799 (-) True G263278
TU298851 lncRNA downstream 25680 1664634 ~ 1665078 (-) True G263277
TU298847 lncRNA downstream 30788 1659557 ~ 1659970 (-) False G263275
TU298861 lncRNA upstream 597 1691767 ~ 1692177 (-) False G263287
TU298864 lncRNA upstream 597 1691767 ~ 1692242 (-) True G263287
TU298858 lncRNA upstream 4384 1695554 ~ 1695729 (-) True G263284
TU298859 lncRNA upstream 6600 1697770 ~ 1698235 (-) True G263285
TU298867 lncRNA upstream 13047 1704217 ~ 1704452 (-) True G263290
CI01000063_01682341_01683245.mRNA mRNA downstream 7513 1682279 ~ 1683245 (-) True CI01000063_01682341_01683245
CI01000063_01669384_01670016.mRNA mRNA downstream 18739 1669317 ~ 1672019 (-) False CI01000063_01669384_01670016
CI01000063_01603848_01622589.mRNA mRNA downstream 67972 1603474 ~ 1622786 (-) True CI01000063_01603848_01622589
CI01000063_01557732_01560541.mRNA mRNA downstream 130217 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
CI01000063_01554604_01555607.mRNA mRNA downstream 135151 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01802070_01805063.mRNA mRNA upstream 110532 1801702 ~ 1805475 (-) True CI01000063_01802070_01805063
CI01000063_01809470_01817028.mRNA mRNA upstream 118225 1809395 ~ 1817028 (-) True CI01000063_01809470_01817028
CI01000063_01856270_01877031.mRNA mRNA upstream 165075 1856245 ~ 1877095 (-) True CI01000063_01856270_01877031
CI01000063_01890725_01899483.mRNA mRNA upstream 199222 1890392 ~ 1899546 (-) True CI01000063_01890725_01899483
CI01000063_01915989_01944590.mRNA mRNA upstream 224253 1915423 ~ 1944590 (-) True CI01000063_01915989_01944590
TU298670 other downstream 20682 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298810 other upstream 485269 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 633942 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1034589 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3471324 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 3497233 5190050 ~ 5190617 (-) True G265565

Expression Profile