RNA id: TU298765


Basic Information

Item Value
RNA id TU298765
length 2652
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G263201
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2353182 ~ 2356169 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACTTTGAGTTCTTTAATAATATGTACAACATAAAACGGCCAAGACACTGAGAAAACATTTATAAGACTTACAAAAGAAAATTCTTTCCTCAAAAAAAGAATAACAATTAGAAAAACATTCAAATCTGACAAAATAAAAATTTGTTACTGCAACAAAGTTGGCATCTCATATACGCAACCGAGTTCTCTTCTAATTCAATAGAAGAATGCTTCATGAGAGAAACTCGCTATTCTTTTCAGAACAGCCATTAAGCCACATTTTATTTTATTGTTGTTCCTCACCTCACCGTCTCACGCTTCACACTCGTCAGAAAGGAAGCTCAAGGACAATGACAAACTGTAAGTGCACCATTAAAGAGTGTCTACAGACCACAAATATGAAAAGTTTAAACACCTGATTTAAGTGGAGTCGTTTTGTATAAGCTACAGAAAATGTTATTTTCAGCGTTATATTTCAAGTTAGCTTTGGTAAGGATTACATTACATATCATATTCCCTTTCCACAAAACACATAAAAAAGGACAAATGTGGTCACATGTATTGTGAAATGAAACTTGGTAATAAACATCAGACTATCTTCCACTTCACAACAATAGACGGCGAGCACAAGATATTGTCTGTTTGTGAATTAAACCTCTATCTTCATCTTTTTTCCCTGATGATATTACGGGTGCTTCTCAATCAGAAGGCTGCGTCCTAGTTAAGGCTACATATCTTGGCTGCACGTCATCAAGCTCTGTTTAAGGATGTCTCAATTTAAAGGATCGTTTAAAGGCAGCCTTCGTTTTGAAGGATGCATCAAGTGTATCCTTCGCATCTTTTGCACACCTTCCAATTCACACATGAATTGTGTGAACATGAACATGTGACGTAGCCATGCGCATTTACTAGACCGTCTCTAGCCTCCAAACCTTCTAAGGACTGGACTAGGAAGAACACAGCCTCACTAGGATGCAGCCTTCCGTTTGAGAAGCACCCTACATGTTTCAAAAGGACAGAGACAAGTGCACAAAATATGTACCTGAAAAAGCAGGACAGTGGCGAGCAGGGGGCCGATGCCCTTACAAGAGGTTTGAGTTTGGTTTCTGATTTGTAACACACTAGTGCCCTTTATAAACAAGCACTCAGCTGAAGACACTTACGGATCCTTGTTGACTGAGCTATAAATGATGTGGTTCACACTGCGAAGCCATTTTTGTGAAATATTTGAAGTTATCTAAAAAAATATATATCATATGATACATTTGAAAAAAACTCCTATATCATCACTTCATTTGTTTTGCTGAGTTCTAAACAGATACAAGATCCGTCACATGTACAGAGTGTTATTTCTGTACATAAACTGACCTCCATGAGTCCCAGAAAGGGCAAACCACTATGGTGAAGTAAACAAGGTATGATTTTAGAAGATCTACTGAGTTATAAAAGACTCCGTCTAAATATTTGTTTCGTTTTGCAGATATACAGTGCACATATTTTCAGTACATTTTCTGATGAATTCTACCACTTGCTGACAGACAAAACATTGACCTTTTTTTGCAGAACAAAACATGATAAATTTACAATTCCTGCTTACAGTTTTTTTTAGTTACCTGTAATTACATACTTTTAGAGTGATACATTCTCCCCATATTTCAATAATAGCTAATGTTGCAGATAAAAATGAACCACTTAGTGGTACAATGTACCAAATTTGTTAAAGGAATTCTTAGAATTAATATCATTTTTCAGGGATAAACATACTGATAAGAAAGTATATTGAAGTTGAATGCCAGTTGTTGTTTGTAAATAAAGACCATTGACTTCCAACGCATATTATTACTTAAAACAACCATAAAGCAGGAAAAGGTATGGGGAAAGACCTTTTCTACCTTGATGCATTACAAAAAAAGCATATTATTGGGTATGCTGTTGCTCTGAAAGTAAGATTATTGTATTGATAAGAGTGGCTGACAGGATTAATAATCATATGAATATCACTTCGCTCTACAGTCTGAATCATTCATTCACTTATCTCCTGTCTTCTCCTCTTCATTCCATACCATTATTAATTTATTGCCTTTCGACAACGCAAATAAATCAATAATTGTTTAGAGGTCCTCAGCCGGTGCACTTGAAAAAGAAGAGAAAAAGTTGTAAATCATCACATTAAGAACAGTGTACTACTTCACATGGGTTTTATGGGAGCTGTGTTGATAATGTTTTTATATGTAAATTCATTGTGTGCACAACTGTCCCTTACAGCGGCCCGTATTTTGCTTCATAGCGTGCCACAACGTTCTTGCAGCGCCCAAAGTCCTTGCGTAACTCTGCCACTTCCTGCCTCAACACCGAGTTCTCTCGCTCCAGGAAGGCCGCTCGTACTGTGATCTGATTCTCTTTAAGCCTCCTGGCATCTCGTGAACGTTTTGCTGCAATATTATTCTTCTTCCTCCGCTGCCAGTATTTGTCGTCCTGAAATAGTTGAGGCTTCAGCTCCTCCTCGGAGAAGCGATGTTTGCGGGGATTAAACAGTTCACCTCCGGGTATGCTGGAGAGCACAAGGTCTGTGGGATCCGGTTCGAAGTTGATCTCTACCTCAATATCGTCTGGATCAATGGGGTCTGGCGTCACACGGTCCTCATCTGTGGTGAAAAGTGAATGAGTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298994 lncRNA downstream 332580 2020363 ~ 2020602 (-) True G263405
TU298983 lncRNA downstream 357078 1995766 ~ 1996104 (-) True G263394
TU298831 lncRNA downstream 364328 1949847 ~ 1988854 (-) True G263260
TU298945 lncRNA downstream 442812 1910148 ~ 1910370 (-) True G263356
TU298939 lncRNA downstream 451641 1901329 ~ 1901541 (-) True G263350
TU298774 lncRNA upstream 10852 2367021 ~ 2369202 (-) False G263207
TU298775 lncRNA upstream 12614 2368783 ~ 2369202 (-) True G263207
TU299019 lncRNA upstream 24243 2380412 ~ 2381248 (-) True G263430
TU299022 lncRNA upstream 25177 2381346 ~ 2383423 (-) True G263431
TU299026 lncRNA upstream 68741 2424910 ~ 2425636 (-) True CI01000063_02416343_02425379
CI01000063_02326799_02327290.mRNA mRNA downstream 25892 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02321620_02324262.mRNA mRNA downstream 28617 2321544 ~ 2324565 (-) True CI01000063_02321620_02324262
CI01000063_02317828_02320348.mRNA mRNA downstream 32834 2317361 ~ 2320348 (-) True CI01000063_02317828_02320348
CI01000063_02293142_02305535.mRNA mRNA downstream 47647 2292193 ~ 2305535 (-) True CI01000063_02293142_02305535
CI01000063_02234891_02253083.mRNA mRNA downstream 100099 2233613 ~ 2253083 (-) True CI01000063_02234891_02253083
CI01000063_02357993_02360597.mRNA mRNA upstream 1757 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02404812_02415053.mRNA mRNA upstream 47973 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02416343_02425379.mRNA mRNA upstream 60104 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
CI01000063_02444203_02454140.mRNA mRNA upstream 87980 2444149 ~ 2454281 (-) True CI01000063_02444203_02454140
CI01000063_02496694_02509735.mRNA mRNA upstream 139843 2496012 ~ 2509735 (-) True CI01000063_02496694_02509735
TU298801 other downstream 25463 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 174846 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 683106 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298806 other upstream 369590 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2806325 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2832234 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2893836 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2893890 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile