RNA id: TU299022


Basic Information

Item Value
RNA id TU299022
length 361
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G263431
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2381346 ~ 2383423 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAACTCTTCTGTTGTTGCAAACTACTAATGTACAATATCACTACATACTCACCAGAAACAGTCCTCTGTGTTATTCTGCTTCTTGTATATAAACGTTGTGCTCCATACAGGCTTGAGAGTATCATTGAAATTCCAAAAGTGAGAGAAGAAGCTGGAGATTTTTCTAGCTGGAGGCAGAAGGCGAGTCAGATCTCTCTTGAAGTCACAAGACAATCCAAAGCTTCCTGCTGATATGATGGGCATGTTGAGGTTCAGACCGATCTCCAAGTCAACCATTTGGAAAGTGGCATAAGTGCAGGTTGGTCCCAGTAGAGCACATCCCTCCTCCCCTGCATTCGCAAGATCATTTAAAATTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299019 lncRNA downstream 98 2380412 ~ 2381248 (-) True G263430
TU298774 lncRNA downstream 12144 2367021 ~ 2369202 (-) False G263207
TU298775 lncRNA downstream 12144 2368783 ~ 2369202 (-) True G263207
TU298765 lncRNA downstream 25177 2353182 ~ 2356169 (-) True G263201
TU298994 lncRNA downstream 360744 2020363 ~ 2020602 (-) True G263405
TU299026 lncRNA upstream 41487 2424910 ~ 2425636 (-) True CI01000063_02416343_02425379
TU298821 lncRNA upstream 47954 2431377 ~ 2432091 (-) True G263250
TU299035 lncRNA upstream 51677 2435100 ~ 2435311 (-) True G263442
TU299036 lncRNA upstream 52088 2435511 ~ 2435757 (-) True G263443
TU299037 lncRNA upstream 52683 2436106 ~ 2436318 (-) True G263444
CI01000063_02357993_02360597.mRNA mRNA downstream 20749 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02326799_02327290.mRNA mRNA downstream 54056 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02321620_02324262.mRNA mRNA downstream 56781 2321544 ~ 2324565 (-) True CI01000063_02321620_02324262
CI01000063_02317828_02320348.mRNA mRNA downstream 60998 2317361 ~ 2320348 (-) True CI01000063_02317828_02320348
CI01000063_02293142_02305535.mRNA mRNA downstream 75811 2292193 ~ 2305535 (-) True CI01000063_02293142_02305535
CI01000063_02404812_02415053.mRNA mRNA upstream 20719 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02416343_02425379.mRNA mRNA upstream 32850 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
CI01000063_02444203_02454140.mRNA mRNA upstream 60726 2444149 ~ 2454281 (-) True CI01000063_02444203_02454140
CI01000063_02496694_02509735.mRNA mRNA upstream 112589 2496012 ~ 2509735 (-) True CI01000063_02496694_02509735
CI01000063_02512138_02519529.mRNA mRNA upstream 128509 2511932 ~ 2519537 (-) True CI01000063_02512138_02519529
TU298801 other downstream 53627 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 203010 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 711270 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298806 other upstream 342336 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2779071 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2804980 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2866582 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2866636 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile