RNA id: TU299042


Basic Information

Item Value
RNA id TU299042
length 418
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G263449
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2440702 ~ 2441119 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAGATACCTTCAAAGGGAAAGAGAGGGAAGAGAGATTTAAAACGAGTTTGGCGTTCATGTTGTAGCATTAGAAATGGTTTTGTCTTTACCTTTTCTAAACCCATATGATTAAGGTAAAGATGTTTAAGTGTGGCAGCGACTGACTGAAAACCCCCTGCTCCGATCCAGCGAATAGGGTTGCGGGAGAGATTAAGCTCTGCTAGGCTGCTGGCTTTAGAAAAGGCCTCACTTGGAACCTCCTTCAGTTTGTTGCTGCCTAAATGAAGAGTATTCAAGTCAGGTGCAGGATCAAAGGCCCCAGGAGCAACCGCTGTGATGGCGTTGGAAGTGAGATAGAGGCCCCTCAGTTTCTCAGTGCCTGTCAGGAGTCCTGCTTCCAATTTAGCGATATCATTGTCCTCCATGTGCAGAGCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299041 lncRNA downstream 1815 2438400 ~ 2438887 (-) True G263448
TU299040 lncRNA downstream 2891 2437472 ~ 2437811 (-) True G263447
TU299037 lncRNA downstream 4384 2436106 ~ 2436318 (-) True G263444
TU299036 lncRNA downstream 4945 2435511 ~ 2435757 (-) True G263443
TU299035 lncRNA downstream 5391 2435100 ~ 2435311 (-) True G263442
TU299044 lncRNA upstream 16570 2457689 ~ 2457888 (-) True G263451
TU298828 lncRNA upstream 19042 2460161 ~ 2467875 (-) True G263257
TU298836 lncRNA upstream 42715 2483834 ~ 2494457 (-) True G263265
TU299051 lncRNA upstream 73699 2514818 ~ 2515086 (-) True G263458
TU299084 lncRNA upstream 247234 2688353 ~ 2688754 (-) True G263491
CI01000063_02416343_02425379.mRNA mRNA downstream 15162 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
CI01000063_02404812_02415053.mRNA mRNA downstream 25649 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02357993_02360597.mRNA mRNA downstream 80105 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02326799_02327290.mRNA mRNA downstream 113412 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02321620_02324262.mRNA mRNA downstream 116137 2321544 ~ 2324565 (-) True CI01000063_02321620_02324262
CI01000063_02444203_02454140.mRNA mRNA upstream 3030 2444149 ~ 2454281 (-) True CI01000063_02444203_02454140
CI01000063_02496694_02509735.mRNA mRNA upstream 54893 2496012 ~ 2509735 (-) True CI01000063_02496694_02509735
CI01000063_02512138_02519529.mRNA mRNA upstream 70813 2511932 ~ 2519537 (-) True CI01000063_02512138_02519529
CI01000063_02580025_02597121.mRNA mRNA upstream 138758 2579877 ~ 2597249 (-) True CI01000063_02580025_02597121
CI01000063_02621471_02632801.mRNA mRNA upstream 179532 2620651 ~ 2632801 (-) True CI01000063_02621471_02632801
TU298801 other downstream 112983 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 262366 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 770626 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298806 other upstream 284640 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2721375 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2747284 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2808886 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2808940 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile