RNA id: TU298828



Basic Information


Item Value
RNA id TU298828
length 1904
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G263257
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2460161 ~ 2467875 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCAATACTGATAACATTACAAGGCACATTTATCGACTGATGCAGATGTATTGTGAATTTTTAATAAAGAATAAAAAGAATAGTTCCAACATAGCCAAAATAAAAGCATTTTTATAAGGTGTGCGCAACACTTCAGGCTAGTGTTGATGATGATGTTATTACCTTGTTCATTGCTCCAGGTTGCTGTGCCCTCAGTCCACCCTGGACTCCTACTGTCTGCTGCTGCTGAAGAGCCTCTGCTAACAGGTTACTGTTGCTTCCCATGCCCGGGTTGTGATGTCCTATTCTGGGCGATCCATTCATCATCTGTGCTCCCAGCATGTTTTGCTGCTGGGGCATGGGCCCCCCTGGCTGCTGCTGTCCATTGCCTTTCTGAGGTCCGAGCATATTCCTGTTCATGTTGCCCACCATCCCTGCCATCTGCTGATGTTGCATAAGGGCGACCTGTTGTGGGGAAAGATGTTGTTGCCCTTGCGGGCCCATGCCTTGGGTGCCCGGAGAAGACTTCATATTCCCGAAAAGCCCCATTGAGGCTCCTGCTGGGCTGCACATCGCACCCTGCTGCGGTGCTGCAGGTGCAGGTCCGTGCCGGAGGAGTTCTGAGAGCTGCTTGTGCTTGGCCGCTGCATCCTGGCCACTGGACACAACTCCTCCAATGGCCCCGCCCCCACTACCCAAATTGGCGTGCAACTGACCAAGGTCCCCTCCATTTTCTAGACTCAGCTCTGAGGAACTAATCAGCTCATCTGGAAGGTCATGCTCCAGGTCAAAAAGCGAGCCAAAATCTTTCCATCGCTGGCTGAGGCAGATAGAGCCGGGGAGGACAGTTTAGGCCTCTTGGCTGAAGGCGGGCCAGAGTCCAGAACGTTCTCGGCCATATTTTTTAACGAATTAAAATATATATCCTCAGAGATAGGCGCGTAAGCCTATTCGTAATCCTCGATTTTAAAAATATCGCTTTTAAAAATATGACTTTTCCCCCTCCTTTTTAGGGACGAAGGGGGGGAAAGTCCCGTGTACAAAATACTCCTCTTTCCTGGGTTCGCCTCTCGATTTCAGCTTCAGCGTATCAACCCCCCTCCCCAGACCGATTTTTGTTCTTTATACAATTCTGCAAGCGGAGGAGGAGGTAGGGGGAGTCGGCTCGGCAAGAAAGGATAAAAAGACACTCCTCGGCTCTACGAGAACTCATCTAGTCCCGTCAAGAGTTACAGAATTGAGCGATGATGTATTTGAAAATAATTTTGCTCGTCTGCCATATCTGTTCGTAACAACAGAGGTGTGTTTTGTAGACTGAGTCGTAAGGGGTTGTCAGTATCAAATGGAAGTAAAATTGTGTCGATAAGTAAATTTTATTTTCTTTCTTTATCTATTTTTTTCCACAGATGTCAGCTGGTATTTTAGTTCCTGAAAATGTTTTCATGACAGACTTATTAGCTTATTAGAGTAAATCTTTTATGAAAATACACTTTTCACATTTTAATTGGAAATTTTTAAAAGTCACTAAAATCGTATCAGTAATACTAGATTTACATTGTTGATCTTAACAGGATTTAGTTATTAGATGCAAGCTACTTATTTAAAAAGAGGAACAAATAACCTACAATGTCCCACTTTGATGAGTGTTTTAACTTAGCAAAAGGCAATATGGCAATATGCAAAAATCAAATGCAAGAACTGATTTAAGAATTACGTTTTATTTGATTTGCTGATTCAAGAATTGCATTGAAATATTGAAAAAAGAGCACCTTATTCTGTAGCCACATTCTTCTATATATATCTGTCAAGCTATCTTTACAATAGTTTGTTAATTTTTAGTCATTACACAAGAAATTAAAAATGTCAATTAAATATCAAACCTTTGTATATTATAGGCCTACTCAGCTTTTTAAATTGAGGTTGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299044 lncRNA downstream 2273 2457689 ~ 2457888 (-) True G263451
TU299042 lncRNA downstream 19042 2440702 ~ 2441119 (-) True G263449
TU299041 lncRNA downstream 21274 2438400 ~ 2438887 (-) True G263448
TU299040 lncRNA downstream 22350 2437472 ~ 2437811 (-) True G263447
TU299037 lncRNA downstream 23843 2436106 ~ 2436318 (-) True G263444
TU298836 lncRNA upstream 15959 2483834 ~ 2494457 (-) True G263265
TU299051 lncRNA upstream 46943 2514818 ~ 2515086 (-) True G263458
TU299084 lncRNA upstream 220478 2688353 ~ 2688754 (-) True G263491
TU298819 lncRNA upstream 251300 2719175 ~ 2721582 (-) True CI01000063_02707551_02721566
TU299088 lncRNA upstream 262312 2730187 ~ 2730387 (-) True G263495
CI01000063_02444203_02454140.mRNA mRNA downstream 5880 2444149 ~ 2454281 (-) True CI01000063_02444203_02454140
CI01000063_02416343_02425379.mRNA mRNA downstream 34621 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
CI01000063_02404812_02415053.mRNA mRNA downstream 45108 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02357993_02360597.mRNA mRNA downstream 99564 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02326799_02327290.mRNA mRNA downstream 132871 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02496694_02509735.mRNA mRNA upstream 28137 2496012 ~ 2509735 (-) True CI01000063_02496694_02509735
CI01000063_02512138_02519529.mRNA mRNA upstream 44057 2511932 ~ 2519537 (-) True CI01000063_02512138_02519529
CI01000063_02580025_02597121.mRNA mRNA upstream 112002 2579877 ~ 2597249 (-) True CI01000063_02580025_02597121
CI01000063_02621471_02632801.mRNA mRNA upstream 152776 2620651 ~ 2632801 (-) True CI01000063_02621471_02632801
CI01000063_02634558_02636087.mRNA mRNA upstream 166683 2634558 ~ 2636391 (-) True CI01000063_02634558_02636087
TU298801 other downstream 132442 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 281825 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 790085 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298806 other upstream 257884 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2694619 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2720528 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2782130 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2782184 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile