RNA id: TU298836


Basic Information

Item Value
RNA id TU298836
length 507
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G263265
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2483834 ~ 2494457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATTTTCAGTTCAGAATTTTCTTTATACATTAAGGAGATCACTTAAATCCCAAAGTTCAGAACACTAGAGATGCGCGTGAAGAGCCAGAACAATAATTCCTTACTGGAGAGACGGGCAGAAAAGAGGACTTGGAGTCAAAGTTGGAAGAGGGTAGTTCAAGGTGATTATTTGCAAAATCCACAATCCCTCATCTGCATTGTACGGTCCTATGCACACCTGTAGTGTCATCAGGTTCCATTACTGAGAAAGAGGGCATAGTGAAAACATTCATGGGACAGGGTGTATGAGGGTGGGAAAACTGCAACATGCATAGGAGGACTGGTATTTCCCATGCAACAAGCCATCAGAAAACACATTATCTTTTCCCAAACACTATCAAAACTTCATTTAAGCCCCAACCACCCCTCAAAAAAAGCAAAGCAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298828 lncRNA downstream 15959 2460161 ~ 2467875 (-) True G263257
TU299044 lncRNA downstream 25946 2457689 ~ 2457888 (-) True G263451
TU299042 lncRNA downstream 42715 2440702 ~ 2441119 (-) True G263449
TU299041 lncRNA downstream 44947 2438400 ~ 2438887 (-) True G263448
TU299040 lncRNA downstream 46023 2437472 ~ 2437811 (-) True G263447
TU299051 lncRNA upstream 20361 2514818 ~ 2515086 (-) True G263458
TU299084 lncRNA upstream 193896 2688353 ~ 2688754 (-) True G263491
TU298819 lncRNA upstream 224718 2719175 ~ 2721582 (-) True CI01000063_02707551_02721566
TU299088 lncRNA upstream 235730 2730187 ~ 2730387 (-) True G263495
TU299092 lncRNA upstream 238362 2732819 ~ 2734736 (-) True G263499
CI01000063_02444203_02454140.mRNA mRNA downstream 29553 2444149 ~ 2454281 (-) True CI01000063_02444203_02454140
CI01000063_02416343_02425379.mRNA mRNA downstream 58294 2416273 ~ 2425540 (-) False CI01000063_02416343_02425379
CI01000063_02404812_02415053.mRNA mRNA downstream 68781 2404142 ~ 2415053 (-) True CI01000063_02404812_02415053
CI01000063_02357993_02360597.mRNA mRNA downstream 123237 2357926 ~ 2360597 (-) True CI01000063_02357993_02360597
CI01000063_02326799_02327290.mRNA mRNA downstream 156544 2326741 ~ 2327290 (-) False CI01000063_02326799_02327290
CI01000063_02496694_02509735.mRNA mRNA upstream 1555 2496012 ~ 2509735 (-) True CI01000063_02496694_02509735
CI01000063_02512138_02519529.mRNA mRNA upstream 17475 2511932 ~ 2519537 (-) True CI01000063_02512138_02519529
CI01000063_02580025_02597121.mRNA mRNA upstream 85420 2579877 ~ 2597249 (-) True CI01000063_02580025_02597121
CI01000063_02621471_02632801.mRNA mRNA upstream 126194 2620651 ~ 2632801 (-) True CI01000063_02621471_02632801
CI01000063_02634558_02636087.mRNA mRNA upstream 140101 2634558 ~ 2636391 (-) True CI01000063_02634558_02636087
TU298801 other downstream 156115 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 305498 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 813758 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU298806 other upstream 231302 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 2668037 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2693946 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2755548 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2755602 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile