RNA id: TU299140



Basic Information


Item Value
RNA id TU299140
length 405
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G263525
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2794285 ~ 2799348 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCGGATGTTGAGTGCAGTGGGGTCATGGAGATTCCAGTAGTCCTTTAAAGCTCTCACCTGCAATGCTCCACTGGCGTCTCTAAGGAGTTGTTTGATTTCTTTGCTGGCATGTGAAGTGGTGAACTGGTTCACAATGTCCAGGGCTGTTTGATTGTAGGTGTTGCGGATGTTCACATCAATCCCAGCATCGAGCAATAATTTTACTACTTCTGTTTTCCCGTAGAGGGCAGCCTCGTGCAGAGCCGTTCCGGATTTAGTGGTTCTGTTTATGTCAATCCCAGCTTTTAGCAGCAGTCTGATAATGTCCTTATGGCCGTTGCGGGCAGCAAGATGCAGGGGGGTGTTATCCCTGCCGTTCCCTTCTAAGAGAGCTACCACCATGTTACTGTTTAACAACAGCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299101 lncRNA downstream 54319 2734909 ~ 2739966 (-) True G263500
TU299092 lncRNA downstream 59549 2732819 ~ 2734736 (-) True G263499
TU299088 lncRNA downstream 63898 2730187 ~ 2730387 (-) True G263495
TU298819 lncRNA downstream 72703 2719175 ~ 2721582 (-) True CI01000063_02707551_02721566
TU299084 lncRNA downstream 105531 2688353 ~ 2688754 (-) True G263491
TU299191 lncRNA upstream 37190 2836538 ~ 2836796 (-) True G263572
TU299243 lncRNA upstream 100012 2899360 ~ 2899598 (-) True G263624
TU299265 lncRNA upstream 125483 2924831 ~ 2925047 (-) True G263646
TU299985 lncRNA upstream 202714 3002062 ~ 3005328 (-) True G264311
TU299987 lncRNA upstream 203450 3002798 ~ 3006270 (-) True G264312
CI01000063_02725759_02726399.mRNA mRNA downstream 67751 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_02707551_02721566.mRNA mRNA downstream 72719 2706964 ~ 2721566 (-) False CI01000063_02707551_02721566
CI01000063_02675583_02681052.mRNA mRNA downstream 113233 2674054 ~ 2681052 (-) True CI01000063_02675583_02681052
CI01000063_02656350_02661590.mRNA mRNA downstream 132485 2656345 ~ 2661800 (-) True CI01000063_02656350_02661590
CI01000063_02634558_02636087.mRNA mRNA downstream 157894 2634558 ~ 2636391 (-) True CI01000063_02634558_02636087
CI01000063_02990060_02990880.mRNA mRNA upstream 189346 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_03296061_03306819.mRNA mRNA upstream 496586 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_03373714_03386774.mRNA mRNA upstream 573695 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03426029_03462400.mRNA mRNA upstream 626258 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03615200_03619061.mRNA mRNA upstream 815788 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
TU298806 other downstream 67750 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 466566 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 615949 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1124209 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 2363146 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2389055 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2450657 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2450711 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 2450818 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile