RNA id: TU299987


Basic Information

Item Value
RNA id TU299987
length 201
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G264312
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3002798 ~ 3006270 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGATCTGTGAAAGAGTGCATAAAAAGATTGTGGAATACTTTAAAAACAATGTTCCTCAATGTCAAATTGCAAAGGCTTTGCAAATCTCATCATTTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTAGAGAAATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299265 lncRNA downstream 77751 2924831 ~ 2925047 (-) True G263646
TU299243 lncRNA downstream 103200 2899360 ~ 2899598 (-) True G263624
TU299191 lncRNA downstream 166002 2836538 ~ 2836796 (-) True G263572
TU299140 lncRNA downstream 203450 2794285 ~ 2799348 (-) True G263525
TU299101 lncRNA downstream 262832 2734909 ~ 2739966 (-) True G263500
TU299989 lncRNA upstream 7553 3013823 ~ 3014146 (-) True G264314
TU299994 lncRNA upstream 34546 3040816 ~ 3041073 (-) True G264319
TU299998 lncRNA upstream 53832 3060102 ~ 3060314 (-) True G264323
TU300038 lncRNA upstream 137593 3143863 ~ 3144167 (-) True G264363
TU300145 lncRNA upstream 265896 3272166 ~ 3272476 (-) True G264466
CI01000063_02990060_02990880.mRNA mRNA downstream 11331 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 276264 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_02707551_02721566.mRNA mRNA downstream 281232 2706964 ~ 2721566 (-) False CI01000063_02707551_02721566
CI01000063_02675583_02681052.mRNA mRNA downstream 321746 2674054 ~ 2681052 (-) True CI01000063_02675583_02681052
CI01000063_02656350_02661590.mRNA mRNA downstream 340998 2656345 ~ 2661800 (-) True CI01000063_02656350_02661590
CI01000063_03296061_03306819.mRNA mRNA upstream 289664 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_03373714_03386774.mRNA mRNA upstream 366773 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03426029_03462400.mRNA mRNA upstream 419336 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03615200_03619061.mRNA mRNA upstream 608866 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 621807 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
TU298806 other downstream 276263 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 675079 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 824462 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1332722 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 2156224 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 2182133 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 2243735 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 2243789 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 2243896 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile