RNA id: TU300145


Basic Information

Item Value
RNA id TU300145
length 311
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G264466
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3272166 ~ 3272476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTATTGTGTCTTAAAAACGGCGGTTGCTAACAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTGTTTTTTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACCTTGATCCGCGACCATGGTGTGCTGTAGTCTGAATATAGCCTACTGTTAGCTTTTTATATCTGACGACTTCATTTAGGCTTCGAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300038 lncRNA downstream 127999 3143863 ~ 3144167 (-) True G264363
TU299998 lncRNA downstream 211852 3060102 ~ 3060314 (-) True G264323
TU299994 lncRNA downstream 231093 3040816 ~ 3041073 (-) True G264319
TU299989 lncRNA downstream 258020 3013823 ~ 3014146 (-) True G264314
TU299987 lncRNA downstream 265896 3002798 ~ 3006270 (-) True G264312
TU300154 lncRNA upstream 7430 3279906 ~ 3280122 (-) True G264475
TU300160 lncRNA upstream 39769 3312245 ~ 3312469 (-) True G264481
TU300161 lncRNA upstream 40076 3312552 ~ 3312768 (-) True G264482
TU300174 lncRNA upstream 65750 3338226 ~ 3338521 (-) True G264495
TU300190 lncRNA upstream 81817 3354293 ~ 3354756 (-) True G264508
CI01000063_02990060_02990880.mRNA mRNA downstream 280699 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 545632 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_02707551_02721566.mRNA mRNA downstream 550600 2706964 ~ 2721566 (-) False CI01000063_02707551_02721566
CI01000063_02675583_02681052.mRNA mRNA downstream 591114 2674054 ~ 2681052 (-) True CI01000063_02675583_02681052
CI01000063_02656350_02661590.mRNA mRNA downstream 610366 2656345 ~ 2661800 (-) True CI01000063_02656350_02661590
CI01000063_03296061_03306819.mRNA mRNA upstream 23458 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_03373714_03386774.mRNA mRNA upstream 100567 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03426029_03462400.mRNA mRNA upstream 153130 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03615200_03619061.mRNA mRNA upstream 342660 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 355601 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
TU298806 other downstream 545631 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 944447 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1093830 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1602090 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1890018 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1915927 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1977529 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1977583 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1977690 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile