RNA id: TU300190


Basic Information

Item Value
RNA id TU300190
length 464
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G264508
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3354293 ~ 3354756 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAAATATATTTTCTTTGCTTAAGGGATATCTTTATCTTCTGTTTTTAGACATTGCAAATAAAATTAGAAACAACTATTTAAGAATAAACTTTTTTGCAGTTATCAGACTGAATTGCTGTAAAAAGGATTGAAGGTTTAATTAAACTTCAATTTAAGATTAAATTGGGAAAAAACAAATGATACAATGAAGTTTGTTTCATTTAAAGTTAACATACACTGCCCGGCCAAAAAAAAGTCGCTGTTTGGATTTTAATAGGCAAATACTTAAGAATTAATGGATCATTATTACAGTGATTATTATGTTTCTAGCATGTTATATGTTTGGCAACGGTTCTTTTAACCCTTAAAGATGGAGTGTGTAGCTTTTCATTTCTTAAACAACCATGTAGGAAGACACATCATGGCCATATTCCAGGATGACAATGTCAAGATTCACCAGGATTAAAATTGTGAAAGAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300174 lncRNA downstream 15772 3338226 ~ 3338521 (-) True G264495
TU300161 lncRNA downstream 41525 3312552 ~ 3312768 (-) True G264482
TU300160 lncRNA downstream 41824 3312245 ~ 3312469 (-) True G264481
TU300154 lncRNA downstream 74171 3279906 ~ 3280122 (-) True G264475
TU300145 lncRNA downstream 81817 3272166 ~ 3272476 (-) True G264466
TU300060 lncRNA upstream 12505 3367261 ~ 3368526 (-) True G264382
TU300066 lncRNA upstream 72676 3427432 ~ 3521389 (-) True G264388
TU300204 lncRNA upstream 179284 3534040 ~ 3534243 (-) True G264522
TU300214 lncRNA upstream 188699 3543455 ~ 3543676 (-) True G264532
TU300227 lncRNA upstream 204787 3559543 ~ 3559788 (-) True G264545
CI01000063_03296061_03306819.mRNA mRNA downstream 47474 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_02990060_02990880.mRNA mRNA downstream 362826 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 627759 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_02707551_02721566.mRNA mRNA downstream 632727 2706964 ~ 2721566 (-) False CI01000063_02707551_02721566
CI01000063_02675583_02681052.mRNA mRNA downstream 673241 2674054 ~ 2681052 (-) True CI01000063_02675583_02681052
CI01000063_03373714_03386774.mRNA mRNA upstream 18287 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03426029_03462400.mRNA mRNA upstream 70850 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03615200_03619061.mRNA mRNA upstream 260380 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 273321 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03667811_03688065.mRNA mRNA upstream 312785 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
TU298806 other downstream 627758 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1026574 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1175957 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1684217 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1807738 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1833647 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1895249 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1895303 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1895410 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile