RNA id: TU300214


Basic Information

Item Value
RNA id TU300214
length 222
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G264532
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3543455 ~ 3543676 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGACGCTTGAACATTTTGAGTTTACTCGCTTCATTCGCGCGTGAAATTCAATTCACAACAGACGCGAATTCGCGTCATGAGAGGGGCTTCTGCCAGGCGGCTTGTCTCATTTCTGCACACTTCCTCTGAATAAACACATCAACTCGTCAGCAGAAAGTAGTTGTAAAACACGGCGAATAAGCTCAATTTGCCGGCTTTAGCTAGCTTGTAGTCTCAATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300204 lncRNA downstream 9212 3534040 ~ 3534243 (-) True G264522
TU300066 lncRNA downstream 22066 3427432 ~ 3521389 (-) True G264388
TU300060 lncRNA downstream 174929 3367261 ~ 3368526 (-) True G264382
TU300190 lncRNA downstream 188699 3354293 ~ 3354756 (-) True G264508
TU300174 lncRNA downstream 204934 3338226 ~ 3338521 (-) True G264495
TU300227 lncRNA upstream 15867 3559543 ~ 3559788 (-) True G264545
TU300246 lncRNA upstream 87483 3631159 ~ 3631379 (-) True G264564
TU300247 lncRNA upstream 88617 3632293 ~ 3632514 (-) True G264565
TU300248 lncRNA upstream 89470 3633146 ~ 3633431 (-) True CI01000063_03628232_03633396
TU300249 lncRNA upstream 90772 3634448 ~ 3634747 (-) True G264567
CI01000063_03426029_03462400.mRNA mRNA downstream 79557 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03373714_03386774.mRNA mRNA downstream 156681 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03296061_03306819.mRNA mRNA downstream 236636 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_02990060_02990880.mRNA mRNA downstream 551988 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 816921 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_03615200_03619061.mRNA mRNA upstream 71460 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 84401 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03667811_03688065.mRNA mRNA upstream 123865 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
CI01000063_03695944_03716188.mRNA mRNA upstream 152268 3695944 ~ 3716188 (-) True CI01000063_03695944_03716188
CI01000063_03742908_03771506.mRNA mRNA upstream 198940 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
TU298806 other downstream 816920 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1215736 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1365119 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1873379 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1618818 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1644727 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1706329 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1706383 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1706490 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile