RNA id: TU300227


Basic Information

Item Value
RNA id TU300227
length 246
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G264545
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3559543 ~ 3559788 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGTCTCTGATTCTCGCTGCCTGCCTCGACCCCTGCCTGTCCCTGACTACGGTATTGCTCTGCCCTTTTCTGTATTGCTGCTGTGTTTAATAAAGCTGCTTATGGATCCACACGCTGTTGACCCATCACTACAATTATACAGCTAAGTGCCTTCACGCAGCCTTTCTCCTGCTAAAGCCAATATGCCGATGGTTGTAAATTGAGCAAAAATCGTCCGATAAATATTGGCGGCCAATACATCGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300214 lncRNA downstream 15867 3543455 ~ 3543676 (-) True G264532
TU300204 lncRNA downstream 25300 3534040 ~ 3534243 (-) True G264522
TU300066 lncRNA downstream 38154 3427432 ~ 3521389 (-) True G264388
TU300060 lncRNA downstream 191017 3367261 ~ 3368526 (-) True G264382
TU300190 lncRNA downstream 204787 3354293 ~ 3354756 (-) True G264508
TU300246 lncRNA upstream 71371 3631159 ~ 3631379 (-) True G264564
TU300247 lncRNA upstream 72505 3632293 ~ 3632514 (-) True G264565
TU300248 lncRNA upstream 73358 3633146 ~ 3633431 (-) True CI01000063_03628232_03633396
TU300249 lncRNA upstream 74660 3634448 ~ 3634747 (-) True G264567
TU300250 lncRNA upstream 75736 3635524 ~ 3635810 (-) True G264568
CI01000063_03426029_03462400.mRNA mRNA downstream 95645 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03373714_03386774.mRNA mRNA downstream 172769 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03296061_03306819.mRNA mRNA downstream 252724 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_02990060_02990880.mRNA mRNA downstream 568076 2988694 ~ 2991467 (-) True CI01000063_02990060_02990880
CI01000063_02725759_02726399.mRNA mRNA downstream 833009 2725759 ~ 2726534 (-) False CI01000063_02725759_02726399
CI01000063_03615200_03619061.mRNA mRNA upstream 55348 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03628232_03633396.mRNA mRNA upstream 68289 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03667811_03688065.mRNA mRNA upstream 107753 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
CI01000063_03695944_03716188.mRNA mRNA upstream 136156 3695944 ~ 3716188 (-) True CI01000063_03695944_03716188
CI01000063_03742908_03771506.mRNA mRNA upstream 182828 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
TU298806 other downstream 833008 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1231824 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1381207 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1889467 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1602706 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1628615 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1690217 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1690271 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1690378 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile