RNA id: TU300253


Basic Information

Item Value
RNA id TU300253
length 274
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G264571
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3638332 ~ 3638605 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGGGTTTAGGAGAGAAGGAGTGTGGCTGAAGGGATTGGGGTGGTCTAATTCAGTCTAATTCAGTGGCAAATGCTTGTCTTACCCTTTACCAAGCATAATGCAAAGTTTGGCAGACAATTCTCCTTTCTGTTGCACTATTGTATGTGAACTGAACTGAGCTGGATGAGGACATCACTGTTTTCTCCAGAGCTGCTGTATAGATAAATGAACTAAATTAATAACTAATGATTTCTACAACAGAAATGAATCAATACTGAACTTACTTAAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300252 lncRNA downstream 108 3637996 ~ 3638224 (-) True G264570
TU300251 lncRNA downstream 2211 3635889 ~ 3636121 (-) True G264569
TU300250 lncRNA downstream 2522 3635524 ~ 3635810 (-) True G264568
TU300249 lncRNA downstream 3585 3634448 ~ 3634747 (-) True G264567
TU300248 lncRNA downstream 4901 3633146 ~ 3633431 (-) True CI01000063_03628232_03633396
TU300254 lncRNA upstream 93 3638698 ~ 3638935 (-) True G264572
TU300255 lncRNA upstream 1081 3639686 ~ 3639891 (-) True G264573
TU300256 lncRNA upstream 1611 3640216 ~ 3640503 (-) True G264574
TU300257 lncRNA upstream 2925 3641530 ~ 3641781 (-) True G264575
TU300258 lncRNA upstream 3741 3642346 ~ 3642595 (-) True G264576
CI01000063_03628232_03633396.mRNA mRNA downstream 4886 3628077 ~ 3633446 (-) False CI01000063_03628232_03633396
CI01000063_03615200_03619061.mRNA mRNA downstream 17896 3615136 ~ 3620436 (-) True CI01000063_03615200_03619061
CI01000063_03426029_03462400.mRNA mRNA downstream 174434 3425606 ~ 3463898 (-) True CI01000063_03426029_03462400
CI01000063_03373714_03386774.mRNA mRNA downstream 251558 3373043 ~ 3386774 (-) True CI01000063_03373714_03386774
CI01000063_03296061_03306819.mRNA mRNA downstream 331513 3295934 ~ 3306819 (-) True CI01000063_03296061_03306819
CI01000063_03667811_03688065.mRNA mRNA upstream 28936 3667541 ~ 3688065 (-) True CI01000063_03667811_03688065
CI01000063_03695944_03716188.mRNA mRNA upstream 57339 3695944 ~ 3716188 (-) True CI01000063_03695944_03716188
CI01000063_03742908_03771506.mRNA mRNA upstream 104011 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
CI01000063_03772788_03776821.mRNA mRNA upstream 134011 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
CI01000063_03784602_03791834.mRNA mRNA upstream 144989 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
TU298806 other downstream 911797 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1310613 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1459996 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 1968256 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1523889 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1549798 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1611400 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1611454 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1611561 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile