RNA id: TU300333


Basic Information

Item Value
RNA id TU300333
length 215
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G264647
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3966027 ~ 3966241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACCGACGCTCGACACCCGACGGCCAAGTAGCACGTCCGTTCTGTGCCTGAGCAAGATGAAATGCCTTTCCGTACCAGCAGGTGGCAGTAGCTGAACAGCCAATCAGAATGATCAGATGGCCCGACGGACCGACGAGCGCCGACGCCGATTCAACATTTCGAATCGTCCGGAAAAAAGCCGACGAGGACCAACTTCAGCCGACGGTGCAGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300332 lncRNA downstream 320 3965061 ~ 3965707 (-) True G264646
TU300288 lncRNA downstream 1552 3961527 ~ 3964475 (-) True G264602
TU300278 lncRNA downstream 133169 3823501 ~ 3832858 (-) True G264595
TU300061 lncRNA downstream 158222 3805437 ~ 3807805 (-) True G264383
TU300275 lncRNA downstream 163720 3802051 ~ 3802307 (-) True G264593
TU300284 lncRNA upstream 18912 3985153 ~ 3985847 (-) True G264600
TU300360 lncRNA upstream 70193 4036434 ~ 4036726 (-) True G264673
TU300296 lncRNA upstream 70965 4037206 ~ 4038101 (-) True G264610
TU300362 lncRNA upstream 76704 4042945 ~ 4043349 (-) True G264675
TU300364 lncRNA upstream 79615 4045856 ~ 4046061 (-) True G264677
CI01000063_03894170_03896007.mRNA mRNA downstream 69831 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 80009 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_03784602_03791834.mRNA mRNA downstream 174193 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
CI01000063_03772788_03776821.mRNA mRNA downstream 189206 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
CI01000063_03742908_03771506.mRNA mRNA downstream 194521 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
CI01000063_04056574_04087071.mRNA mRNA upstream 89955 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_04101695_04159421.mRNA mRNA upstream 135161 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04183070_04264881.mRNA mRNA upstream 216339 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04471188_04479927.mRNA mRNA upstream 503659 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 700925 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
TU298806 other downstream 1239492 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1638308 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1787691 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2295951 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1196253 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1222162 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1283764 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1283818 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1283925 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile