RNA id: TU300362


Basic Information

Item Value
RNA id TU300362
length 405
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G264675
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4042945 ~ 4043349 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAACAGATAGTGAGCTTCTTCATATACAGTACATGCCAGTTTAAAATAGCTCTCTCTCTATGGTCTTATTGGTAAAAATTATTTTAATAATTATTAGGCTTAAATGAAACTTTTCTCACAGTGAGACTTGGTAACCACAGGTAAAACCATACATGGCTACTCACTACCACTGTCAAATGATATTATATTATGATATGTTATATAGGCCTATAAAAAATGCCTAAACACAGGTACAAACTACACCTTAACAAAGACATGAATTGTATATTCCCCTACCCACCTAATAAATATATTGCAATATAAATGCCTATAACATAGTTTTCAATATAAATATTCCACATTTCCAAAACCATGGTAAATTATCACAGTTCATTCATGGTAAATGTTTTGTGGTGATTTTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300296 lncRNA downstream 4844 4037206 ~ 4038101 (-) True G264610
TU300360 lncRNA downstream 6219 4036434 ~ 4036726 (-) True G264673
TU300284 lncRNA downstream 57098 3985153 ~ 3985847 (-) True G264600
TU300333 lncRNA downstream 76704 3966027 ~ 3966241 (-) True G264647
TU300332 lncRNA downstream 77238 3965061 ~ 3965707 (-) True G264646
TU300364 lncRNA upstream 2507 4045856 ~ 4046061 (-) True G264677
TU300425 lncRNA upstream 114292 4157641 ~ 4158147 (-) True G264728
TU300453 lncRNA upstream 198407 4241756 ~ 4321718 (-) True G264755
TU300417 lncRNA upstream 291725 4335074 ~ 4336258 (-) True G264721
TU300492 lncRNA upstream 318213 4361562 ~ 4361794 (-) True G264794
CI01000063_03894170_03896007.mRNA mRNA downstream 146749 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 156927 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_03784602_03791834.mRNA mRNA downstream 251111 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
CI01000063_03772788_03776821.mRNA mRNA downstream 266124 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
CI01000063_03742908_03771506.mRNA mRNA downstream 271439 3742616 ~ 3771506 (-) True CI01000063_03742908_03771506
CI01000063_04056574_04087071.mRNA mRNA upstream 12847 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_04101695_04159421.mRNA mRNA upstream 58053 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04183070_04264881.mRNA mRNA upstream 139231 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04471188_04479927.mRNA mRNA upstream 426551 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 623817 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
TU298806 other downstream 1316410 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1715226 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1864609 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2372869 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1119145 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1145054 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1206656 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1206710 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1206817 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile