RNA id: TU300425


Basic Information

Item Value
RNA id TU300425
length 332
lncRNA type intronic
GC content 0.42
exon number 2
gene id G264728
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4157641 ~ 4158147 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGGAAGCGCCGACCAGCCACAAAGTTAGCAAGATATATAACATTTGTAGAGGAAAACTGTTATAAAATTACTTGTTTAGTTACGTTAGGTTAGACTCATCTAGTGTTTGTCATGGGGGTGGCACTCTCTATGGCAATTCAGTGGAGCTCTGATGCTGATAAACTAGAGGATAGCCCTCTAAATAATGACTTGCTGACTGAAATCCTGCTCTTCACGGAGGAGTTCGGCGACAGACACCCACATGAGGCCAGGCTTAAATTCAGCGAGCCTTTACAATGGAAAACAACTCTAGAAGCGTCTGATTTCATATCAGATTTATATGACATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300364 lncRNA downstream 111580 4045856 ~ 4046061 (-) True G264677
TU300362 lncRNA downstream 114292 4042945 ~ 4043349 (-) True G264675
TU300296 lncRNA downstream 119540 4037206 ~ 4038101 (-) True G264610
TU300360 lncRNA downstream 120915 4036434 ~ 4036726 (-) True G264673
TU300284 lncRNA downstream 171794 3985153 ~ 3985847 (-) True G264600
TU300453 lncRNA upstream 83609 4241756 ~ 4321718 (-) True G264755
TU300417 lncRNA upstream 176927 4335074 ~ 4336258 (-) True G264721
TU300492 lncRNA upstream 203415 4361562 ~ 4361794 (-) True G264794
TU300499 lncRNA upstream 221277 4379424 ~ 4379654 (-) True G264801
TU300502 lncRNA upstream 242075 4400222 ~ 4401481 (-) False G264803
CI01000063_04056574_04087071.mRNA mRNA downstream 69026 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_03894170_03896007.mRNA mRNA downstream 261445 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 271623 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_03784602_03791834.mRNA mRNA downstream 365807 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
CI01000063_03772788_03776821.mRNA mRNA downstream 380820 3772616 ~ 3776821 (-) True CI01000063_03772788_03776821
CI01000063_04183070_04264881.mRNA mRNA upstream 24433 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04471188_04479927.mRNA mRNA upstream 311753 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 509019 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04834309_04848552.mRNA mRNA upstream 675900 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05056169_05057789.mRNA mRNA upstream 898022 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
TU298806 other downstream 1431106 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1829922 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 1979305 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2487565 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 1004347 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 1030256 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 1091858 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 1091912 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 1092019 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile