RNA id: TU300453


Basic Information

Item Value
RNA id TU300453
length 329
lncRNA type read_through
GC content 0.31
exon number 2
gene id G264755
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4241756 ~ 4321718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTAATGATGTACCGGCGCGAAAGAATGTTTTTGTTTGTTTGTATCATTTTTACAACAGATTCTTAATTGTTCTCAAAATGCTGCAGTTTTTTAAATATCTCGTACTGAAAACTATGGCACTACCAAGAATTTTGTTCTCAGAGGCAATCTTTGTGGTTGCATTTGTTCATTTTAAAGGAGTGGTTGATTATGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGGTGTTAGAGCATAAACAACATCTGCAAAGTTACGACGCTCAAAGTTCAATGCAAAGGGAGATATTTTCTTTTAAAGAATTTGCTTTTTAAAGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300425 lncRNA downstream 83609 4157641 ~ 4158147 (-) True G264728
TU300364 lncRNA downstream 195695 4045856 ~ 4046061 (-) True G264677
TU300362 lncRNA downstream 198407 4042945 ~ 4043349 (-) True G264675
TU300296 lncRNA downstream 203655 4037206 ~ 4038101 (-) True G264610
TU300360 lncRNA downstream 205030 4036434 ~ 4036726 (-) True G264673
TU300417 lncRNA upstream 13356 4335074 ~ 4336258 (-) True G264721
TU300492 lncRNA upstream 39844 4361562 ~ 4361794 (-) True G264794
TU300499 lncRNA upstream 57706 4379424 ~ 4379654 (-) True G264801
TU300502 lncRNA upstream 78504 4400222 ~ 4401481 (-) False G264803
TU300505 lncRNA upstream 78504 4400222 ~ 4401601 (-) True G264803
CI01000063_04101695_04159421.mRNA mRNA downstream 82335 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04056574_04087071.mRNA mRNA downstream 153141 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_03894170_03896007.mRNA mRNA downstream 345560 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 355738 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_03784602_03791834.mRNA mRNA downstream 449922 3783594 ~ 3791834 (-) True CI01000063_03784602_03791834
CI01000063_04471188_04479927.mRNA mRNA upstream 148182 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 345448 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04834309_04848552.mRNA mRNA upstream 512329 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05056169_05057789.mRNA mRNA upstream 734451 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 748705 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
TU298806 other downstream 1515221 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 1914037 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2063420 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2571680 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 840776 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 866685 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 928287 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 928341 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 928448 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile